G219173


Basic Information

Item Value
gene id G219173
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25264106 ~ 25268474 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297393
ttttcaaatcgtTTGTACACAGTGACATTAAATATTCTTGAGTTGCGGCTTCCTGTAGCTCTCCTCCTTTGGTTGTTGACACTGTTTGCGtgagccaagtctcaagacttaaaataataataaacacggttgattttatctgaacCCCAGGATGAGAAAAACACTGACTAAAACTTTTAATCCTAAACATCTTACACTGAATGATCGAGATGATGCGACCGCAACTCGACTGCAGCTCGACTCTAGCTAGACTCTCGTGATTTTATCTCGATTATTTTGTCTGCGACAGTGAAATCCCTTGAAAATCGTTAGGTGTAAGGCCGGCATTAGGCTCAGGTAGCTTTTCTAAAACACCTTTTtagctaaactctaaacactgtTCCCTACATCACATACAGCAATTCACACTTAAcacccttttttaaaaaaaaaaacaatgacctGCAAACACCACATTCACTTACCAGTTACCCAAACTCATCTTACCCATtggtgtgtgtggagtttgGATTAAAAATATCATTCTGGCAAGAGTTTTTACAGAGCTTTAGGTGATGTGTTTGATATATCCAGAAATTTAAGACTTTAATTTATGCCTTAGGGAAATGAAAAGCGTTCAAAATTGAGCTTTGACCTCAACCATCAAATGTAAACTCTGTTAGCAGTAACAAAGGATTAGCATTTTATGAAAATGGTCCATTGTCAGCTGTTAAACGTGGTAGTTGATCCACATGGTAAGAATATCTCAGCAGCTTCAACTCAAAAATGTCAACAGCTGTCTTAAAGTTTTATGTTAAACTAAATTGCATTTACTATTTCCTTTAGCTCATCACTTTATCACTTTATTTGACTTTAGACTCCTCTCTGCAAGTTGATTTGACTGCATAATTCATGTTGTTTCAATTTAGCAATTCAATTTTACAACAGAGATAACTTCTTAAAATGAGATGTTTTTACTTATTCCAGTTATTTGCTTTAACTTGCAAAGTTTGTAAGTCATATGTTGAGTATGACCatatacataattatttagtacatataatacatacaatttaaaacatgtgAAGTGAAGTGATGGTCAGCCATACAGGTTGTGAGTGCTTTTGTGATTGCTTTTGTTAATACATTCATGAGCAATTAATTGTCCACTTGCTAATCGCAAACAACTAAACTTAATTATTTTGAACTGATTAATTAGTTCATTAAAactattccattttttttcagtttaacttGCTGACAAGTcataaattttattttcatgagTTAAGATCAATGCAAAAACGTAAGTAAGACTTATTGCTCAAACACTTTTTACTGTGTAATGGaagcatttgcacatctgtatcagcatTAGGTTCAACTTAGAGTAGATGAAggcatttattaaaatacacaaacctttaaatatattgtgttgccaGTGTATCTGAAAATTGAATTCAAATATTGGCATAATTTGTGAACTAGAAGCAGtgatttataaaacatttatttcaaatgtgtttattatattgtcAGTGAAAATATGATGAAAAACTGGCATAACAGGAGTAGTACTGTAACCTgcagatttatttcaatttcagattgTATGATGGATACCATATGACATACTGCTAAAGATATTgcaatatcttattttaaaaaaaatactacaaccTAAAGAATACCCAGCAGAGCACAGAGCAAAAACGAatgatttgtgtgtgtaatttacaAAGTTATGATTGTTGTCTTGCTGTTGACTTCTTATTTGGACATATTGATGATAGTACGAATgctgtaaaacagaaaacatttaaaaacattaaaaagtgaaTACATTCAACATTTTAGACATATATGGTAGTGTAATC

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297393 True 1859 lncRNA 0.32 2 25264106 25268474

Neighbor

gene id symbol gene type direction distance location
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding upstream 23105 25226441 ~ 25241001 (+)
rrh rrh,LOC107666394,LOC107585226,LOC107733708 coding upstream 71727 25184634 ~ 25192379 (+)
ap5s1 ap5s1 coding upstream 465507 24794890 ~ 24798599 (+)
cdc25b cdc25b,LOC108417292 coding upstream 476766 24779609 ~ 24787340 (+)
LOC103045503 sfxn5,sfxn5a,LOC108262907 coding upstream 585993 24658431 ~ 24678113 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding downstream 42369 25310843 ~ 25315607 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding downstream 71990 25340464 ~ 25406863 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding downstream 148906 25417380 ~ 25430559 (+)
LOC103041526 NA coding downstream 162772 25431246 ~ 25437272 (+)
kiaa1109 kiaa1109 coding downstream 265117 25533591 ~ 25612184 (+)
G219167 NA non-coding upstream 11597 25252285 ~ 25252509 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding upstream 18112 25244129 ~ 25245994 (+)
G219155 NA non-coding upstream 46089 25217719 ~ 25218017 (+)
G219154 NA non-coding upstream 48298 25209535 ~ 25215808 (+)
G219153 NA non-coding upstream 56096 25204034 ~ 25208010 (+)
LOC111196010 NA non-coding downstream 120618 25389092 ~ 25389979 (+)
LOC111196009 NA non-coding downstream 127326 25395800 ~ 25397172 (+)
G219271 NA non-coding downstream 176797 25445271 ~ 25445499 (+)
G219282 NA non-coding downstream 364002 25632476 ~ 25692517 (+)
G219286 NA non-coding downstream 478757 25747231 ~ 25807019 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 89398 25161727 ~ 25174708 (+)
G219050 NA other upstream 421573 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 797239 24443291 ~ 24466867 (+)
fam213a fam213a,fam213aa,LOC107690162,LOC107733773,LOC107582522 other upstream 1192480 24064495 ~ 24071626 (+)
G218758 NA other upstream 1200318 24059211 ~ 24063788 (+)
LOC103047652 NA other downstream 170245 25438719 ~ 25442581 (+)
LOC111196018 NA other downstream 1931978 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3222372 28490846 ~ 28551769 (+)
G220074 NA other downstream 3450782 28719256 ~ 28720661 (+)
G220194 NA other downstream 3872893 29141367 ~ 29142018 (+)

Expression


Co-expression Network