LOC103046115 (lrit3)


Basic Information

Item Value
gene id LOC103046115
gene name lrit3
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25218149 ~ 25226250 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297439
TTTCATTTTGGTGGAGCCACACAAGAGGTTGCACAAAGTAACCTGAGAGTACCTAAATTATATTggtgtaaaatcctgtattattacactactgtactgtgttATTCCATATTCCTCTTTCTCTGTAAATGTTGGTTCTATATCTCTTATCTTGTAAAATCTATGTGTACTAAAAGTGGAACTGCAAACCCTGATTTGTATTTACTTCAAGAAAGTAAAAGTGAATTACACTCCACACCTCTAGGGGGAGCCCTAGAGTTGTGCATCCTATGTCGGTATAATTTCATTCAACACAGTCTAGTAGCATCGGATACAGTAATGGAACCAAAGGccctgtaaatatttaaatacaatctGAAGCTCAATAGGACTGCTGCACCTATCAGATTGCACTGAAATAAAGCCAGGCCTGCAGGACAACCCCTGGCTCTGCGACTGCAGACTGTCTGTTTTGCTGGACATCAGTAAGGCCCCAGAATCCTCTCTTGTTCTGCTGGATCGGTTCCTGACGTGTATTGGGCCTCCGAACCTGGCTGGAGTTCCATTTCAGGGCGTAGATCTGCCGCGCTGCCGCCGGCCCTCAGTGCTGACCTCAGCCACAAAGGTCACGACCTTACTGGGAAGTAATGTCCTGTTGCGCTGCGATGCCAGAGGATACCCTACCCCTGCTCTCATCTGGATCAAATCAGCTAGACCTAACCTCTATAACACAGCTTGTTGCAGACAGATTGAGAGCATTGAAAATGAGAAGCTACCAAGAAAACTGCCGAGCTTTGTGCAGGAATCCCCTCGTATAGGACTGCGGTGGTCTGTAATCAGCCTGAATGGGATCTCGTATAAGGATGCTGGAGAGTACCGCTGCAGAGCTCAGAACATGGCCGGAACATCAGAAGCCATCATCAGTCTGAATGTGGTTGGAGTCATTAATGGAAATTCAGATTCCAGAAAGACAGTCGCACCTAAATCTCAAACTTCAAAGCTGCCCCCCTCTGAGAGGAAACCCAGCCAACGACTCAAAATGACCCCCAGCTTATCCCCTAAAAATGTCACTGGAGGCCTTCTCTCCGCTCCTAAGAGAATCCTTACAGCTCCTAAAGCCAGCAGGGACAAGATGAAGAGAGACAGGGCTGGGTAGACCCAGCCTGCCACAAAGCTGATTATCCAAACCACACAGGCCAAGCACTTCATGTCCAATTTCAGTCAGTTTTAACAAAGCCAAACCATGctttaccttaaaaaaataatttgaaatattttattgttttgctcAAAAATAAATCCAATCTTATTGGTCAGCACTGTGTTTTAATGACATTTAATGACCTCTAGATGGCGTCCATTAGCTTGTCATAGGCAGATTTTAGAGAATCCTACATTTTCAATTGTATTGGACTGAGAAGACTTAAATTGTGGCCCACATATAGAGTCATACGTGTATGTTTGGTGAAAGTAACACGTTAGTAAGTAGAAGCAAGTGAACA
>XM_007238002.3
CTCACATTCATTAACTCTCTATGGTGTGATGTTACCCTCAACAAACTATCTTTGGTTATTACATCATTCTATACCTTACttattttgaatttattttatttttaatataatgttacaagGAATACCTATGTCCAATTCAATGAGATTTTCATTTGTTGCCTGGGCAACAGTATTTAGATCACTTTTGTTAGGGCCATCATGATAAATCAGTAGTGATTCAAATAGCTTgttatcaaaataaaagcaaaaatggTCTGAAAAATCTTCCAACTAGTGTTGTGATTTTTATCTCCACCCAAATATAATTCCGGGTAgagcattaatattttaaacaccCCAGATCCAAATCTCAACTCTATGgtatgatttaattttttgtagAAAACAAATTAGCACTTTTTTAGCATTACTCCCCTCACAAAAGTGGTCTAACTGCATGATGTTGCCCTGAgtcaacaaaagaaaaacactgctttattgaataaagtgaataaaaaataataaaaaatcaatatgttTAACTCACCAATTATACCTCTTTGTATATTTAAtcacatatacatatttataatttatacaaaaaagATTCTTATGTTATCTATTGCTCACACTGTGTCCCATGTGGCTTTGGATGATGGCTCCACccatagataaaaaaaaacatacatttacccCTAATTTTATTGAATAGAGATATGTATTTTATGAAGCTATATTACAAAAATTAATGTTAAAGTATTAAAGGGAGagtataataacaaaaaaaagctataaaacCAGTTAAAAATGGCAAGAAATTAAGATGGTTCTAATTAAAGCTTCACAATTCTAAAAGAAGAAATTGGGAGCAAGAGACAAAACATTTTGAGCAGgcaatttattgaaaacaataattaaactgAAATAGGCTGTTCATCAGCTCATCAAATGTTAAAGACCATAACAGAATTTAAACCGAAAAAAATATTGGGCTAAATGGTGGTATGTAAGTAGAGTTCAAAACTGGTGGATGGGGCAGGAAGTAGCAAACTGTGGACCAGCGGATTGAGTACAATCAGTAACTGTCCATCTAAAACGTCCACTAATATACACTAACATGCCATCAGTCCTTGCATAGCAGTATGTATATTCGTAATGCCGAATAATCTGAGCAATACTTTGGCCAGAGTAATACTTTGGGAGGGGGCTTGGGAATGCTCACACATGTacatgttgtgaggtgttatcttgtgagtgtggCAAAACATAATAGTGGGTGTTGGATGGGACATTCTTTTTCTCAGGTTCTTGAGACACAGTGACAAAAGCATACCAGAAAAACATTGTAGAAGGCATTACTACCTACAGTGTGTGGCAGtgattgtgaccagcagcatctgattagaattgtccatgcaaacagacaagagaCTCTGTCAGAAAACACATCCCTATTTAATGCTGCCTAATTATCTTACATGGGACTAGGCATAAATCATGGAACACAGTACAGTGTACTTTAGTATTTAGTTTACTGTGTTCTGTGTACACAATTAAACCCATAATAACTGGTTATAGACTCGAGCTCCACAGTCTGACAGATGCATGGAGTCTGAGGTGAAGCTTGACTTGTGTATGACTCTGTCGCTGCTCCTAAGAGTGTGTTGATCTTCTCCTGGCCAGAGTAATCCCGGCTAATCCCTGCAGCCGTTCTTGTGATCCATGGCAGAGTGTTTGGGAATGCCATACTCTCGCTCAGGGGAGTGCCGCTGCGTTCCTAGGACACCTGTCTCAAAGCTATGCACATGCTCTCGTGTGTTCACCTCCTGATGGGTTTGGCATTTTATGTGCATGCACAGAATGCCACATGTCCATCTTTGTGCACTTGTGCCTTTCATGGACGCAGCAATGAAAAGGGGCTCAGGACTGTGCTGTGTAAGAATCCTTCCTTGACAGCCATCCCGGCCAGCTTACCAACAGACACCGTGAAGTTCCGTCTGGAGCGCACCTCCGTCTCTCGGGTCTTTAGAGGAGCCTTCTCCACCCTGCCGGACCTTGTGTACCTCTGGCTTACCTACAACTCCATCACCATTCTCCATCCACGCAGCTTCTCTAACCTCACATTCCTCCATGAGCTGCGATTGGATGGAAATCTTCTGTCCACTTTCCCTTGGGAGGCCCTGAAGGACATACCCCGGCTCCGGACACTTGGCCTGCACAACAACCGCCTGTCACGAGTCCCTCCTCAGGCAGCACAGTACCTGGGCAACATCACTTACCTGGACCTGTCCAGCAACAAGCTGAGTACACTGCCAAATGAACTAATCACTCTGTGGCCCTTTACCACTCAAAGTGAACCCCAGCGCTCTGTGGTACTGGGCCTGCAGGACAACCCCTGGCTCTGCGACTGCAGACTGTCTGTTTTGCTGGACATCAGTAAGGCCCCAGAATCCTCTCTTGTTCTGCTGGATCGGTTCCTGACGTGTATTGGGCCTCCGAACCTGGCTGGAGTTCCATTTCAGGGCGTAGATCTGCCGCGCTGCCGCCGGCCCTCAGTGCTGACCTCAGCCACAAAGGTCACGACCTTACTGGGAAGTAATGTCCTGTTGCGCTGCGATGCCAGAGGATACCCTACCCCTGCTCTCATCTGGATCAAATCAGCTAGACCTAACCTCTATAACACAGCTTGTTGCAGACAGATTGAGAGCATTGAAAATGAGAAGCTACCAAGAAAACTGCCGAGCTTTGTGCAGGAATCCCCTCGTATAGGACTGCGGTGGTCTGTAATCAGCCTGAATGGGATCTCGTATAAGGATGCTGGAGAGTACCGCTGCAGAGCTCAGAACATGGCCGGAACATCAGAAGCCATCATCAGTCTGAATGTGGTTGGAGTCATTAATGGAAATTCAGATTCCAGAAAGACAGTCGCACCTAAATCTCAAACTTCAAAGCTGCCCCCCTCTGAGAGGAAACCCAGCCAACGACTCAAAATGACCCCCAGCTTATCCCCTAAAAATGTCACTGGAGGCCTTCTCTCCGCTCCTAAGAGAATCCTTACAGCTCCTAAAGCCAGCAGGGACAAGATGAAGAGAGACAGGGCTGGGTAGACCCAGCCTGCCACAAAGCTGATTATCCAAACCACACAGGCCAAGCACTTCATGTCCAATTTCAGTCAGTTTTAACAAAGCCAAACCATGctttaccttaaaaaaataatttgaaatattttattgttttgctcAAAAATAAATCCAATCTTATTGGTCAGCACTGTGTTTTAATGACATTTAATGACCTCTAGATGGCGTCCATTAGCTTGTCATAGGCAGATTTTAGAGAATCCTACATTTTCAATTGTATTGGACTGAGAAGACTTAAATTGTGGCCCACATATAGAGTCATACGTGTATGTTTGGTGAAAGTAACACGTTAGTAAGTAGAAGCAAGTGAACACATTTAACATACAAGACAAATAAGTTATGGTACCATCTCTCCACCCAATATGTTAAATTTAGCAAAAAATGGGTCTGTaagcatgaaaaaaacatgCTCTAATGCTCacattgcagaaaatgaaaattaaaaaaaaaagatttatttgaGTATTCTTCAGGTTGCTCCcacatatacagtcatatgtgtgtgtttgtttaaagtAAGACGTTAGTGAGAAGACGTAaattaatacacatttaacatatgagaaaaataaaatgtggcatgtccaatattacacaatattataTAGACCACCTTTCCAcccattatttaaaattttgctaaGAATTGAGCTATAAGTGTAAAATCATGCTTTAAACATTGCAGAAAAGGACCATTTTAAGGTTTCTTAGAGTATAATTCTGGTTGCTGACTCCATTGCTGGTCCAGAGTGTGTTTAATCAATGATATCTTTGCAAACTTTAGCCATATTCAAATTCATCTGGATGCTGTTTTAAAGAGGACATAAGAAATGAAATGGCAAATGTGGCATGAGAGCGTGAGATTGAAGCCAGTTGCTTGAGTTCCACAGCCAGTGTGTGATACTGGCAGCCACGAACACTGTAGTCCCATAGAATGTAGGCAGTCACTGCTTTCACAGGTCACTAAGAATCTATTATacataacatttatatatatatatatatata

Function

symbol description
lrit3 Involved in regulation of fibroblast growth factor receptor signaling pathway. Predicted to be located in dendrite; endoplasmic reticulum membrane; and perikaryon. Predicted to be integral component of membrane. Implicated in congenital stationary night blindness 1F.

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3

GO: NA

KEGG:

id description
K20230 KEK1; kekkon-1

RNA

RNA id representative length rna type GC content exon number start site end site
TU297439 False 1481 lncRNA 0.44 4 25218844 25221687
XM_007238002.3 True 4127 mRNA 0.41 5 25218149 25226250

Neighbor

gene id symbol gene type direction distance location
enpep NA coding downstream 2298 25194787 ~ 25215851 (-)
lamtor3 lamtor3 coding downstream 34524 25178632 ~ 25183625 (-)
LOC103032648 LOC103032648,LOC108441777 coding downstream 506489 24710304 ~ 24711660 (-)
LOC103046721 LOC108441774 coding downstream 614451 24602568 ~ 24603698 (-)
mavs NA coding downstream 640235 24569270 ~ 24577914 (-)
LOC103045808 LOC103045808,LOC108421350,LOC108263479,LOC107747568,LOC103043775,LOC107666441,LOC107585225,LOC107733735,LOC105896540 coding upstream 15294 25241544 ~ 25249222 (-)
LOC103044566 NA coding upstream 26582 25252832 ~ 25259679 (-)
LOC103043775 LOC103043775,LOC103045808,LOC108421350,LOC108263479 coding upstream 41842 25268092 ~ 25276976 (-)
LOC103044089 LOC103044089 coding upstream 55672 25281922 ~ 25290577 (-)
fam241a LOC107695033,LOC107585232,LOC107733699 coding upstream 72970 25299220 ~ 25309273 (-)
LOC111196007 NA non-coding downstream 42063 25168637 ~ 25176086 (-)
G219218 NA non-coding downstream 45508 25172387 ~ 25172641 (-)
G219209 NA non-coding downstream 60458 25157036 ~ 25157691 (-)
G219130 NA non-coding downstream 97562 25120372 ~ 25120587 (-)
G219072 NA non-coding downstream 183187 25034737 ~ 25034962 (-)
G219245 NA non-coding upstream 94858 25321108 ~ 25321955 (-)
LOC111196011 NA non-coding upstream 163809 25390059 ~ 25397490 (-)
G219344 kiaa1109 non-coding upstream 378183 25604433 ~ 25606058 (-)
G219351 NA non-coding upstream 416364 25642614 ~ 25653393 (-)
G219353 letm1 non-coding upstream 427905 25654155 ~ 25662895 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other downstream 517500 24683237 ~ 24700649 (-)
G218781 NA other downstream 1161272 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 1360642 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 1368349 23835779 ~ 23849800 (-)
march8 march8 other downstream 1561163 23454175 ~ 23656986 (-)
G219510 NA other upstream 1246378 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 1512554 26738804 ~ 26757592 (-)
G219671 NA other upstream 1600778 26827028 ~ 26827527 (-)
epas1 epas1,epas1a,LOC102794480,LOC108430450,LOC107739260 other upstream 2888676 28114926 ~ 28302444 (-)
G220285 NA other upstream 4333809 29560059 ~ 29563970 (-)

Expression


Co-expression Network