G219271


Basic Information

Item Value
gene id G219271
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 25445271 ~ 25445499 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297507
tttatttatacttatgtaatttttggtcctccatagtttacttgtttaaagaacaatttgacctgattttcaatgtttgtgactctcagattaggtGAAGTTTGCATTCATGTTAAGTTAAAAAAGTTACGTCCACTGTTTTGAACACTGTTTACCGCTAAACGGAAGTGTCCTAGGAACAGCTACGTCACTTCctacgctcatgaatattcctctGAAACGGTCTATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297507 True 229 lncRNA 0.35 1 25445271 25445499

Neighbor

gene id symbol gene type direction distance location
LOC103041526 NA coding upstream 7999 25431246 ~ 25437272 (+)
c25h9orf72 cunh9orf72,zgc:100846,c3h9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028 coding upstream 14712 25417380 ~ 25430559 (+)
LOC103042335 lingo2,lingo2b,LOC107666555,LOC107556920 coding upstream 38408 25340464 ~ 25406863 (+)
LOC103043156 eif4e,LOC107585229,LOC107747571,LOC108263665,LOC107556921,LOC103460523,LOC103354029 coding upstream 129664 25310843 ~ 25315607 (+)
metap1 metap1,LOC107733733,LOC107556924,LOC107695030 coding upstream 204270 25226441 ~ 25241001 (+)
kiaa1109 kiaa1109 coding downstream 88092 25533591 ~ 25612184 (+)
letm1 letm1,LOC107556916 coding downstream 197054 25642553 ~ 25684011 (+)
LOC103023829 foxi3 coding downstream 568824 26014323 ~ 26018552 (+)
LOC103044529 LOC103044529 coding downstream 635330 26080829 ~ 26086150 (+)
c25h20orf194 cunh20orf194,c3h20orf194 coding downstream 644484 26089983 ~ 26125612 (+)
LOC111196009 NA non-coding upstream 48099 25395800 ~ 25397172 (+)
LOC111196010 NA non-coding upstream 55292 25389092 ~ 25389979 (+)
G219173 NA non-coding upstream 176797 25264106 ~ 25268474 (+)
G219167 NA non-coding upstream 192762 25252285 ~ 25252509 (+)
G219162 LOC103045808,LOC108263479,LOC108421350,LOC103044089,LOC107747568,LOC107556900,LOC103043775,LOC107666441 non-coding upstream 199277 25244129 ~ 25245994 (+)
G219282 NA non-coding downstream 186977 25632476 ~ 25692517 (+)
G219286 NA non-coding downstream 301732 25747231 ~ 25807019 (+)
G219367 NA non-coding downstream 455144 25900643 ~ 25900869 (+)
G219374 NA non-coding downstream 501510 25947009 ~ 25947344 (+)
G219404 NA non-coding downstream 756730 26202229 ~ 26204872 (+)
LOC103047652 NA other upstream 2690 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 142684 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 270563 25161727 ~ 25174708 (+)
G219050 NA other upstream 602738 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 978404 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 1754953 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 3045347 28490846 ~ 28551769 (+)
G220074 NA other downstream 3273757 28719256 ~ 28720661 (+)
G220194 NA other downstream 3695868 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 4190562 29636061 ~ 29640401 (+)

Expression


Co-expression Network