G219471


Basic Information

Item Value
gene id G219471
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26282460 ~ 26309176 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297802
TGCCTGAGTaAAGGCCTGATCACTTGGGTTGAGTTAAGCCAGGTTGCTGGAAACCTGTGCTACTGTAAATTCCTGACAACAGTTTGTTGAGATTGATAGGCACATCAAAGAAAAATACGAATTGTACAAATTGAATTGAATCAATTGGCATATACAGTCCATACATAGGCAGACAAGGCTGctgctctgtactgtatatatttttaacaaatcTGTGGCTCTATCTGATCAAAGCTAGCTGTAACATCCAAAATACTGACCCTCTcattttacatcaaatattCATAAGACCCAATACACACCCAATACTACTGCATTACTAGTAGTACTATGTTTTTTCAAGATcacatttttcttcattttttccctGAAATCTGAGCTCAAAACACTGATCAATCTGAAATAAACTGTGGTTACATTCATTCAACGCTCCAAAGAGCCAAAACTGCATCTGCTCATTTGATTGTTTTGATATAAACCTTAACATGTTATTATTGAAAtgtgaaagaaatgtaaaacaGTGGCCTAATTGTAAACAGAGGTATTAATCTGACACTTGAGAGACGGAcacttaaatgtaaataaatctaCTGATTATAGGTACTGGTCCATACCGTTAATGAGGTCTGAAtgcagagaaaaataaaaaagaaatccatgcacctttaaatgtgtaaaagtgtttaactGCAGTGTGTGCGCTAAATTTAGCTAATCTCCCACCACTGTCATGCTTTGGTTCAATATAACAAAAAGTGTTGAAATACAAGGCAACAACCAAGCGAAACAAAGTGAAAGATGCATGAGGCACAGAGATCAAAGTACATCTAGAAATGGCTTCAAATTCAAAGTGTGTAGAGACATGCAGAAATGACAAGAATCAAAAAATTTgagacagtaaagaaaaaacacacacaaacagaaggCAGACAGTAACAGCCATTTCACCAGGTTAAAGGTTTAAAGGTCTAGTTTCaactaataaatgtttttaaatgatttagtcCTAGACTAGGCTTAATTTTGTGGCTGCCAGAAGGCCAAGCTGTTTAGCAGCTTTAGATTTACCCTAAGTACAGGGTCAGTAACAGAGTGGTTAACAACACTACGAGAAACAAAATAGAGAGGAAAGACGAGGTGTATGACATGGTGAATGCGTACACATCTGCTTTTCATACACTCAAACCTTCATCAGATATTAGGAAATGTTGTGGTTGCATGTCTCTCTCccagtagaagtagtagttaTCTCCAGTAGATGGCACGCATGAGCTGCACGAGTGTGTGTACTCTACTGGCACTGCGGTGTCAGGCTGGTCTTGTCTTTGCAGCAGGCGGGAAAAGGCGTTCTCCTCGTTCCCCTTCAGTTAACAGGAGGATCTCGGATCTTCACACTTCCATCTTCCATCCCAAAGTAAACTCGCTCAGCCATCCCCACAAACAGCCCTGTCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297802 True 1454 lncRNA 0.39 2 26282460 26309176

Neighbor

gene id symbol gene type direction distance location
LOC103044048 NA coding downstream 143287 26127628 ~ 26139173 (-)
fgfr3 fgfr3 coding downstream 453814 25750867 ~ 25828646 (-)
nsd2 whsc1,LOC103458261 coding downstream 642229 25624647 ~ 25640231 (-)
LOC103022475 NA coding downstream 659358 25617911 ~ 25623102 (-)
fam241a LOC107695033,LOC107585232,LOC107733699 coding downstream 973187 25299220 ~ 25309273 (-)
gfra4 gfra4,gfra4a,LOC107747595,LOC107693311,LOC107568637,LOC107695017,LOC107733662 coding upstream 180548 26489724 ~ 26541157 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC107733777,LOC107666556,LOC107089908 coding upstream 358766 26667942 ~ 26684762 (-)
sdccag8 sdccag8 coding upstream 678017 26987193 ~ 27092128 (-)
LOC103024887 dync2li1 coding upstream 882856 27192032 ~ 27198625 (-)
LOC111196017 LOC108435962,LOC108426032 coding upstream 931295 27240471 ~ 27242080 (-)
G219472 rpia,LOC107733738,LOC107695020,LOC107568642 non-coding downstream 3692 26227869 ~ 26278768 (-)
G219474 NA non-coding downstream 12301 26257382 ~ 26270159 (-)
G219460 NA non-coding downstream 138869 26143354 ~ 26143591 (-)
G219448 NA non-coding downstream 156848 26043206 ~ 26125612 (-)
G219450 LOC103044529 non-coding downstream 196395 26062604 ~ 26086065 (-)
G219544 NA non-coding upstream 321496 26630672 ~ 26648411 (-)
G219543 NA non-coding upstream 339338 26648514 ~ 26653244 (-)
G219550 NA non-coding upstream 345541 26654717 ~ 26654969 (-)
G219666 NA non-coding upstream 487076 26796252 ~ 26796721 (-)
G219669 NA non-coding upstream 490230 26799406 ~ 26799852 (-)
LOC103046115 lrit3 other downstream 1056210 25218149 ~ 25226250 (-)
LOC103045183 emx1,LOC103045183,LOC108441775,LOC108263581,LOC107567848,LOC107678523,LOC107733702,LOC107690190,LOC102233543,LOC103458176,LOC103150078,LOC107097582 other downstream 1581811 24683237 ~ 24700649 (-)
G218781 NA other downstream 2225583 24055525 ~ 24056877 (-)
G218720 LOC108444338,LOC104946244,LOC101064687,LOC103387332 other downstream 2424953 23850963 ~ 23857507 (-)
LOC103032322 eif4e1c,if4e,LOC103032634,LOC108444323,LOC107690176,LOC107582514,LOC103032322,LOC108444348 other downstream 2432660 23835779 ~ 23849800 (-)
G219510 NA other upstream 163452 26472628 ~ 26474247 (-)
zbtb18 zbtb18,LOC107666464,LOC107587843 other upstream 429628 26738804 ~ 26757592 (-)
G219671 NA other upstream 517852 26827028 ~ 26827527 (-)
epas1 epas1,epas1a,LOC102794480,LOC108430450,LOC107739260 other upstream 1805750 28114926 ~ 28302444 (-)
G220285 NA other upstream 3250883 29560059 ~ 29563970 (-)

Expression


Co-expression Network