G219565


Basic Information

Item Value
gene id G219565
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 26974011 ~ 27073535 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU297933
ATGCCCATTGCCCTTTTTCTAGTTCTGATATGAAATGAAGGTCCCtgctttaaaaagagaaaagaaaaaaagaagtacTTGAAAGCACACATTCCCTGCCCAcgctatttttcattttttgtaataatgtaatttttgcTTTGTAAAGTGTAATGGTGTGAATGTGGTGAGACGCTGCCaggagaccaaaaaaaaaaatcaaaaacaacaaaaaaactaaacaaaaaaagggtTCACTCTGGTGACATTCAGACAGGCCCACTTTTCccatcctcctcatcctccctCTCAGATTCCCTGTGCTTTTAGAGCTTTCTGGGAAAAGTCGGCCTGATCCGAAGTCACCGCCTCAACAGTTAActgtcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaactaaaaacaacCTACACTCTGCACCTGATGACGACACACACAAGGTGAACTTGAACACGAAACTCCGGTACTAGTGACGGCCACAGAGCGAGTCTACTGATCACAGTCTTGCACTGCAGGCCTCAAACTGAAAGGTTCAAGTGGTGtgtatctttgtgtgtgtgtgtgtgtgtgtgtgtgtCTGCGTGTGTTTGCACATCTGTGGGTGAGCAACTAAAAGAGGCTAGATGCATTCATTAGTGAATAATGAGtagtaacactgtaaaacatgatGGTGGTGAATCTGTCAGTCTCACTTCATTAAATGGAGCATCAGTAGATTGTGCAG
>TU297934
ATGCCCATTGCCCTTTTTCTAGTTCTGATATGAAATGAAGGTCCCtgctttaaaaagagaaaagaaaaaaagaagtacTTGAAAGCACACATTCCCTGCCCAcgctatttttcattttttgtaataatgtaatttttgcTTTGTAAAGTGTAATGGTGTGAATGTGGTGAGACGCTGCCaggagaccaaaaaaaaaaatcaaaaacaacaaaaaaactaaacaaaaaaagggtTCACTCTGGTGACATTCAGACAGGCCCACTTTTCccatcctcctcatcctccctCTCAGATTCCCTGTGCTTTTAGAGCTTTCTGGGAAAAGTCGGCCTGATCCGAAGTCACCGCCTCAACAGTTAActgtcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaactaaaaacaacCTACACTCTGCACCTGATGACGACACACACAAGGTGAACTTGAACACGAAACTCCGGTACTAGTGACGGCCACAGAGCGAGTCTACTGATCACAGTCTTGCACTGCAGGCCTCAAACTGAAAGGTTCAAGTGGTGtgtatctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtggaaaagaCCCAAAAGGAGCTGTAAAACAGTGCGAGTAACAAAcctacacacaaaaacacacacatatgtacgTATACATACAcgtacacacatacaaatacagtacacatatatatacacacacacacgcctggTCACCCAAACATATGGGTTCCATTCTTACTTACTGCAGggtctataataaatattttacacctCAACGTACTCTTTGCTGCTACTGTTTGTACTGTCTACAACAGACTTCTCCTGGTAGTGTATTATGAACAAGCATGAAttgtaaagtatttatttaaaaacaaaacagacaaaacctgtacaaaaaaaagaacaaaaaaaaagaaaagaaatcagTCACTTGTATAATTAATTTTACGTCcatgtagctttagagtttGTGACACTTCTTGACCTTGCTAGCTCTGTCATTAGATCCATGTTAAGATCTAGTCATGTCGTTAAGAGTTTTATGCAGAAGGGATTCAagacccaaaaaaacagaaggagaaGGAGAGCGAGAGGAACGACTGCATTACCGGTCGTCATGTTTAATGACTGAAGCAGAACGTTTATTTCTGAAGCTTTGGCCCACAGGGATGTGAAATTGCCGATCTGCGAGAAATTGTTTTTGTACACTGAACATCCTTAGtatttttacatgtaaatgtaTATGATAGGGATGCACATTATTTTCCTTCTTACAGACTGCTTAAATAAAGCACTATGTCAATctgaaaaaaaatt
>TU297935
aaaaaaagaaaaaaaaaaaagaaaagaaatcagTCACTTGTATAATTAATTTTACGTCcatgtagctttagagtttGTGACACTTCTTGACCTTGCTAGCTCTGTCATTAGATCCATGTTAAGATCTAGTCATGTCGTTAAGAGTTTTATGCAGAAGGGATTCAagacccaaaaaaacagaaggagaaGGAGAGCGAGAGGAACGACTGCATTACCGGTCGTCATGTTTAATGACTGAAGCAGAACGTTTATTTCTGAAGCTTTGGCCCACAGGGATGTGAAATTGCCGATCTGCGAGAAATTGTTTTTGTACACTGAACATCCTTAGtatttttacatgtaaatgtaTATGATAGGGATGCACATTATTTTCCTTCTTACAGACTGCTTAAATAAAGCACTATGTCAATctgaaaaaaaaaaaaatt
>TU297936
ATGCCCATTGCCCTTTTTCTAGTTCTGATATGAAATGAAGGTCCCtgctttaaaaagagaaaagaaaaaaagaagtacTTGAAAGCACACATTCCCTGCCCAcgctatttttcattttttgtaataatgtaatttttgcTTTGTAAAGTGTAATGGTGTGAATGTGGTGAGACGCTGCCaggagaccaaaaaaaaaaatcaaaaacaacaaaaaaactaaacaaaaaaagggtTCACTCTGGTGACATTCAGACAGGCCCACTTTTCccatcctcctcatcctccctCTCAGATTCCCTGTGCTTTTAGAGCTTTCTGGGAAAAGTCGGCCTGATCCGAAGTCACCGCCTCAACAGTTAActgtcaaacaaacaaacaaacaaacaaacaaacaaacaaacaaacaaactaaaaacaacCTACACTCTGCACCTGATGACGACACACACAAGGTGAACTTGAACACGAAACTCCGGTACTAGTGACGGCCACAGAGCGAGTCTACTGATCACAGTCTTGCACTGCAGGCCTCAAACTGAAAGGTTCAAGTGGTGtgtatctttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtgtgtgtggaaaagaCCCAAAAGGAGCTGTAAAACAGTGCGAGTAACAAAcctacacacaaaaacacacacatatgtacgTATACATACAcgtacacacatacaaatacagtacacatatatatacacacacacacgcctggTCACCCAAACATATGGGTTCCATTCTTACTTACTGCAGggtctataataaatattttacacctCAACGTACTCTTTGCTGCTACTGTTTGTACTGTCTACAACAGACTTCTCCTGGTAGTGTATTATGAACAAGCATGAAttgtaaagtatttatttaaaaacaaaacagacaaaacctgtacaaaaaaaagaacaaaaaaaaagaaaagaaatcagTCACTTGTATAATTAATTTTACGTCcatgtagctttagagtttGTGACACTTCTTGACCTTGCTAGCTCTGTCATTAGATCCATGTTAAGATCTAGTCATGTCGTTAAGAGTTTTATGCAGAAGGGATTCAagacccaaaaaaacagaaggagaaGGAGAGCGAGAGGAACGACTGCATTACCGGTCGTCATGTTTAATGACTGAAGCAGAACGTTTATTTCTGAAGCTTTGGCCCACAGGGATGTGAAATTGCCGATCTGCGAGAAATTGTTTTTGTACACTGAACATCCTTAGtatttttacatgtaaatgtaTATGATAGGGATGCACATTATTTTCCTTCTTACAGACTGCTTAAATAAAGCACTATGTCAATctgaaaaaaaaaaaaatt

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU297933 False 736 lncRNA 0.41 2 26982620 26985824
TU297934 False 1357 lncRNA 0.38 2 26982620 27073535
TU297935 False 428 lncRNA 0.35 3 26974011 27069868
TU297936 True 1362 lncRNA 0.38 2 26982620 27069868

Neighbor

gene id symbol gene type direction distance location
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding upstream 253706 26692153 ~ 26720305 (+)
atrn atrn coding upstream 504340 26335600 ~ 26469671 (+)
eif2ak3 eif2ak3,LOC107683275 coding upstream 642311 26285777 ~ 26331700 (+)
LOC103042087 rpia,LOC107671341,LOC107695020 coding upstream 689896 26273839 ~ 26284115 (+)
slc4a11 slc4a11,LOC107747581 coding upstream 704316 26143357 ~ 26269695 (+)
cep170 cep170 coding downstream 20563 27094098 ~ 27181917 (+)
abcg8 abcg8,LOC107666472 coding downstream 209065 27282600 ~ 27293085 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 359327 27432862 ~ 27467984 (+)
slc3a1 slc3a1,LOC107585281 coding downstream 400374 27473909 ~ 27492416 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107585255,LOC107733780,LOC107602502,LOC107666367 coding downstream 436679 27510214 ~ 27711719 (+)
G219601 NA non-coding upstream 72622 26901092 ~ 26901389 (+)
G219600 NA non-coding upstream 73774 26899764 ~ 26900237 (+)
G219596 NA non-coding upstream 84966 26888836 ~ 26889045 (+)
G219594 NA non-coding upstream 91863 26881930 ~ 26882148 (+)
G219592 NA non-coding upstream 95737 26878033 ~ 26878274 (+)
G219617 sdccag8 non-coding downstream 12470 27086005 ~ 27088552 (+)
G219618 NA non-coding downstream 16928 27090463 ~ 27092176 (+)
G219627 NA non-coding downstream 114453 27187988 ~ 27211622 (+)
G219630 dync2li1,LOC107666473 non-coding downstream 123160 27196695 ~ 27198589 (+)
G219631 NA non-coding downstream 138174 27211709 ~ 27218211 (+)
LOC103047652 NA other upstream 1531430 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 1671424 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 1799303 25161727 ~ 25174708 (+)
G219050 NA other upstream 2131478 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 2507144 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 126917 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 1417311 28490846 ~ 28551769 (+)
G220074 NA other downstream 1645721 28719256 ~ 28720661 (+)
G220194 NA other downstream 2067832 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2562526 29636061 ~ 29640401 (+)

Expression


Co-expression Network