G219630 (dync2li1,LOC107666473)


Basic Information

Item Value
gene id G219630
gene name dync2li1,LOC107666473
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27196695 ~ 27198589 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU298026
GTGATGGGTATTTGAACTAGATCAGATAAAGAAATACCTCCTCCCAGTTCCCACAGGTGAGCTATGTCTTTAGGCGTATTATGTCCTCTTGCTCGCCTCCCAAACGTATACTCCAAAGCAAGGGTTGGTTTCGGTGCTTCATCTCTATCAAGGCACCTCAGCAATATTGTAGTTTTACCCCCAGATTTACTGCCCATAAACAACACAGTCTCTCGCTCACATTAGCCTCCTCCTCTGGAGCCTCTTCATCAGCACTTCTGCTTTCTCTGGTCTGAAGCTCCGCCGCAGCAAAGTCCCACAGCGTGTCTGAACTACAGCACAAAACAGCCTGTGATCCTCAGCTCTCTCTGAACAAGTTCTTAGCTGAGTTCTTACCTACTTAGCTATGGCTCAATTACTATATTAACAGATTTAATGCTACAACAGCAGCCCAGTAAAGCG
>TU298027
GTGATGGGTATTTGAACTAGATCAGATAAAGAAATACCTCCTCCCAGTTCCCACAGGTGAGCTATGTCTTTAGGCGTATTATGTCCTCTTGCTCGCCTCCCAAACGTATACTCCAAAGCAAGGGTTGGTTTCGGTGCTTCATCTCTATCAAGGCACCTCAGCAATATTGTAGTTTTACCCCCAGATTTACTGCCCATAAACAACACAGTCTCTCGCTCACATTAGCCTCCTCCTCTGGAGCCTCTTCATCAGCACTTCTGCTTTCTCTGGTCTGAAGCTCCGCCGCAGCAAAGTCCCACAGCGTGTCTGAACTAACTCTAGGCATGTCTCCTCCGCAGGTCTTTAAATGGTCATAGTTAGATGAATGTTCGCATGGTTATGGCTAAAATTCAGCCATTATATACAAAAGCTATCGCTAACCTAGCTGAGTAGACCGTACAGTGATT

Function

symbol description
dync2li1 Predicted to enable dynein heavy chain binding activity. Acts upstream of or within intraciliary transport. Located in non-motile cilium. Is expressed in several structures, including alar plate midbrain region; midbrain; pectoral fin; pectoral fin bud; and pronephric duct. Human ortholog(s) of this gene implicated in asphyxiating thoracic dystrophy. Orthologous to human DYNC2LI1 (dynein cytoplasmic 2 light intermediate chain 1).

NR:

description
PREDICTED: cytoplasmic dynein 2 light intermediate chain 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298026 False 441 lncRNA 0.46 4 27196695 27198241
TU298027 True 446 lncRNA 0.46 5 27196695 27198589

Neighbor

gene id symbol gene type direction distance location
cep170 cep170 coding upstream 14778 27094098 ~ 27181917 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 218921 26827348 ~ 26977774 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding upstream 476390 26692153 ~ 26720305 (+)
atrn atrn coding upstream 727024 26335600 ~ 26469671 (+)
eif2ak3 eif2ak3,LOC107683275 coding upstream 864995 26285777 ~ 26331700 (+)
abcg8 abcg8,LOC107666472 coding downstream 84011 27282600 ~ 27293085 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 234273 27432862 ~ 27467984 (+)
slc3a1 slc3a1,LOC107585281 coding downstream 275320 27473909 ~ 27492416 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107585255,LOC107733780,LOC107602502,LOC107666367 coding downstream 311625 27510214 ~ 27711719 (+)
six3 six3,six3a,LOC107733790 coding downstream 642255 27840844 ~ 27844241 (+)
G219618 NA non-coding upstream 104519 27090463 ~ 27092176 (+)
G219617 sdccag8 non-coding upstream 108143 27086005 ~ 27088552 (+)
G219565 NA non-coding upstream 123160 26974011 ~ 27073535 (+)
G219564 NA non-coding upstream 214240 26977818 ~ 26982455 (+)
G219601 NA non-coding upstream 295306 26901092 ~ 26901389 (+)
G219631 NA non-coding downstream 13120 27211709 ~ 27218211 (+)
G219639 NA non-coding downstream 63965 27262554 ~ 27263875 (+)
G219620 NA non-coding downstream 66178 27264767 ~ 27342438 (+)
G219643 NA non-coding downstream 96827 27295416 ~ 27304066 (+)
G219651 NA non-coding downstream 114119 27312708 ~ 27330208 (+)
LOC103047652 NA other upstream 1754114 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 1894108 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 2021987 25161727 ~ 25174708 (+)
G219050 NA other upstream 2354162 24842302 ~ 24842533 (+)
LOC103046104 LOC108441759 other upstream 2729828 24443291 ~ 24466867 (+)
LOC111196018 NA other downstream 1863 27200452 ~ 27236616 (+)
plekhh2 plekhh2 other downstream 1292257 28490846 ~ 28551769 (+)
G220074 NA other downstream 1520667 28719256 ~ 28720661 (+)
G220194 NA other downstream 1942778 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2437472 29636061 ~ 29640401 (+)

Expression


Co-expression Network