G219639


Basic Information

Item Value
gene id G219639
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27262554 ~ 27263875 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU298041
AGAACCGAGAGGAGCTCTTTCAGTCCTGTTAGGTAATTTAACTGGCTGTTTCAGCTCTCGGTGAAGCGCGATCTTATTACTAAACTACAGCGTGGTTTAAAAGCAGCTGCtgattgagaaaaaaaacacaccctaTGCTGGGAGAGAAGCTCGTAAAGCAGCTCTTAAACAGCgctggttgtgtttttttttcctgaacggGCAGCTGCTGCAGGTAATCGGGCTAACTGAAGCTAAGGCTAGCGAGCTATCTTACAGCGTTATTCGCCATTAACACGCTTCAGTTTAAATAGTCTCACCACGCTGTTAAGTTTAGTATAATAAGACCGCGCTTCACCGAGAGCAaaacagccagctagctaaattaCTCACCGGGACTGAAAGAGCTCCCTTCGCGCTGCTTCACTCTAATCCGGCAGGGTTATCACTACTGCTGCTGGAGGCCCACCGCTCCGCCTGTTTTACTGCCGCTGTTTTAAGACTGAGGGGCTTTTAATGAAAACAGAGTAAAGGGGAAACACACAATAAAGAGCAGCGCAGCGGACCTTCAGCACCAGAGTGAAAAAACACTAGATTATTTGACCCAAAATTACACCGAGGGTTTAACTTCCTGCAACTCCCTGAAGATCCCGAAGAAAAGGGCGACCGTCTTGTTGTTACTGACTGAATCAGGCGAGACACGACCATTCAAAACTAGGTGTGGGGGCTACGGTGCCcgaaatgtttatatatatatttttttatttattttatattttactagcACGCTTATGTAATTCAGAGTAAGTATAATAATTAACTATGaacagttattttaaaataatattgttatattaaatctcagacacccccccccctcttttCCATTGACTTTGGTTTCTTCCAAAAGTCACAGCTGATGAGATGATGGATGGTGCATTAGTATAGCTTGTCTAACCCATTTCTTAACGTTGGAAATTGAACAGCACACTTAATTTTCTCTCAGCTCAATGAAAGGCTGGGTTTAATGGTTTAAACTATTAGTCTGCTGTATTTTAGAtgtgttattttgagattatttattgCTAACGTctattaaaacaacatttatgttttgttatatttaaatttataaataaaattatgctTAACATTATAATGTTTAAAGCAACTGATATATAAAGATAGTGAGACAAATAAAGCCAAGTttctaaaaacacatttctactgcagtacaaattaaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298041 True 1260 lncRNA 0.38 2 27262554 27263875

Neighbor

gene id symbol gene type direction distance location
cep170 cep170 coding upstream 80637 27094098 ~ 27181917 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 284780 26827348 ~ 26977774 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding upstream 542249 26692153 ~ 26720305 (+)
atrn atrn coding upstream 792883 26335600 ~ 26469671 (+)
eif2ak3 eif2ak3,LOC107683275 coding upstream 930854 26285777 ~ 26331700 (+)
abcg8 abcg8,LOC107666472 coding downstream 18725 27282600 ~ 27293085 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 168987 27432862 ~ 27467984 (+)
slc3a1 slc3a1,LOC107585281 coding downstream 210034 27473909 ~ 27492416 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107585255,LOC107733780,LOC107602502,LOC107666367 coding downstream 246339 27510214 ~ 27711719 (+)
six3 six3,six3a,LOC107733790 coding downstream 576969 27840844 ~ 27844241 (+)
G219631 NA non-coding upstream 44343 27211709 ~ 27218211 (+)
G219627 NA non-coding upstream 50932 27187988 ~ 27211622 (+)
G219630 dync2li1,LOC107666473 non-coding upstream 63965 27196695 ~ 27198589 (+)
G219618 NA non-coding upstream 170378 27090463 ~ 27092176 (+)
G219617 sdccag8 non-coding upstream 174002 27086005 ~ 27088552 (+)
G219620 NA non-coding downstream 892 27264767 ~ 27342438 (+)
G219643 NA non-coding downstream 31541 27295416 ~ 27304066 (+)
G219651 NA non-coding downstream 48833 27312708 ~ 27330208 (+)
G219657 NA non-coding downstream 110001 27373876 ~ 27408090 (+)
G219891 NA non-coding downstream 664659 27928534 ~ 27928739 (+)
LOC111196018 NA other upstream 25938 27200452 ~ 27236616 (+)
LOC103047652 NA other upstream 1819973 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 1959967 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 2087846 25161727 ~ 25174708 (+)
G219050 NA other upstream 2420021 24842302 ~ 24842533 (+)
plekhh2 plekhh2 other downstream 1226971 28490846 ~ 28551769 (+)
G220074 NA other downstream 1455381 28719256 ~ 28720661 (+)
G220194 NA other downstream 1877492 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2372186 29636061 ~ 29640401 (+)
G220336 NA other downstream 2524064 29787939 ~ 29793496 (+)

Expression


Co-expression Network