G219657


Basic Information

Item Value
gene id G219657
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 27373876 ~ 27408090 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU298069
ggtgagttttatcagcctgtaatctgcttgtttaccgtgttaaaacaagctacgggggacgaatcgctagctaatatctcactgtcttaccagaacacgcaggattactcagtgcacgcaggattactcagtgtaacgctgtcgtttaagtttgggttaactttactagtttaggggactagctagcgtgctagcggatagctatgctaacgctggtgcagcaagccttagtggaaatctggaaatctaagcttactgtaaataaactgaagcactttactcacccaaataaacagttttcaggagaggaatctgtgtagattaatatccagcactcgtttgactttgaaagagctagatttgtatactgagacgctccaccggcaagacaccccccccccccccgccatggcgccacccctgttcactttgatataggcaccctttctagtgtcacttaatgcgccttataatgcgatgcgccctatgtatggaaaaataccagaaaataggcgttctttgatggtgcgtcttataatacggtgcgccttatagtccgaaaaatacggta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU298069 True 571 lncRNA 0.45 2 27373876 27408090

Neighbor

gene id symbol gene type direction distance location
abcg8 abcg8,LOC107666472 coding upstream 80791 27282600 ~ 27293085 (+)
cep170 cep170 coding upstream 191959 27094098 ~ 27181917 (+)
LOC103024575 akt3,akt3a,LOC103024575,LOC108422057,LOC107666430,LOC106589689 coding upstream 396102 26827348 ~ 26977774 (+)
adss adss,LOC107585249,LOC107666526,LOC107698758,LOC107733748 coding upstream 653571 26692153 ~ 26720305 (+)
atrn atrn coding upstream 904205 26335600 ~ 26469671 (+)
ppm1b ppm1b,ppm1ba,LOC107747533,LOC107666482,LOC107733761,LOC107585253 coding downstream 24772 27432862 ~ 27467984 (+)
slc3a1 slc3a1,LOC107585281 coding downstream 65819 27473909 ~ 27492416 (+)
camkmt camkmt,si:ch73-54n14.2,LOC107585255,LOC107733780,LOC107602502,LOC107666367 coding downstream 102124 27510214 ~ 27711719 (+)
six3 six3,six3a,LOC107733790 coding downstream 432754 27840844 ~ 27844241 (+)
LOC103033108 LOC108420482 coding downstream 1170566 28578656 ~ 28607913 (+)
G219620 NA non-coding upstream 31438 27264767 ~ 27342438 (+)
G219651 NA non-coding upstream 43668 27312708 ~ 27330208 (+)
G219643 NA non-coding upstream 69810 27295416 ~ 27304066 (+)
G219639 NA non-coding upstream 110001 27262554 ~ 27263875 (+)
G219631 NA non-coding upstream 155665 27211709 ~ 27218211 (+)
G219891 NA non-coding downstream 520444 27928534 ~ 27928739 (+)
G219896 NA non-coding downstream 539771 27947861 ~ 27948095 (+)
G219917 NA non-coding downstream 774771 28182861 ~ 28185425 (+)
G219914 NA non-coding downstream 811605 28219695 ~ 28224612 (+)
G220032 LOC108422531 non-coding downstream 1156925 28565015 ~ 28568032 (+)
LOC111196018 NA other upstream 137260 27200452 ~ 27236616 (+)
LOC103047652 NA other upstream 1931295 25438719 ~ 25442581 (+)
G219171 cunh4orf32,c3h4orf32 other upstream 2071289 25256950 ~ 25302587 (+)
dapp1 dapp1,LOC107579178,LOC107556904,LOC107667071,LOC107585227,LOC107733757 other upstream 2199168 25161727 ~ 25174708 (+)
G219050 NA other upstream 2531343 24842302 ~ 24842533 (+)
plekhh2 plekhh2 other downstream 1082756 28490846 ~ 28551769 (+)
G220074 NA other downstream 1311166 28719256 ~ 28720661 (+)
G220194 NA other downstream 1733277 29141367 ~ 29142018 (+)
LOC103047316 NA other downstream 2227971 29636061 ~ 29640401 (+)
G220336 NA other downstream 2379849 29787939 ~ 29793496 (+)

Expression


Co-expression Network