LOC103047316


Basic Information

Item Value
gene id LOC103047316
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 29636061 ~ 29640401 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU298869
TATAAACCATCCAATCCTCCATTCGTTTGCACATGTTTAAGTTACCTTTTCGCTCAGGCGCGTGGGCTCCGCTCTGACGTCATTGTGCGGCGCCGGACGGGTCCTGGTTCTCGGGGTTACAGGAGAGCGGCGGCAGGGCGGCGGATCGCTGTGGTCTGTGTTGATTAAAGACCCGCAGAGACTCGACATGTACTACAAAGTCAGCGGAGTGACCGGCAGACTCACCGGATCCACCCCGGCCAGCGCCTACTGCCCGCAGAAAGCTGATGGCGTGCCCATTCACCTGAAGCGTGGAGTCATGGACCGACTGCTGTACAGGACGACGATGGGTTTGACAATTGGCGGAACCCTCTACTGTCTAATGGCCCTGTACATTGCTGCCCAGCCCAGAAAACCTCAGTGACCTCAGTCATCTTCCCCATCTGGATTTAATGGAGTGTACAGGTGGGAGCAGCAAAGTGGACAATTAAGACTGTACTCCCAAAGACAGATGAATAATTGCTTTATTCCTGCCATGCTCTTTCACTTCCCCCATAACACATATTTATAACAAGAGGTCTGGTGTTATCACCTCAAGAAGTCTTGCAAGTacatctttttaaaacatgtgaaATACCTGTCAGGTCTCTCTGTCTGACTAACTTTGGTGGTTTGGACAAGGTTTAATGTTCTATTGCCTTTACAACCAAACCTCCAGCTGGTGAAACAGAGGCTTGTGGGCACACAgacttgttttaacactttttgatgAAAAGGACATTAAAATTAATGCGAACTTCACACACAGCTGGCACATTTAGTGAGTTTTCATACTTGGCAAGGCTTGTTCTCTTGTTCCATCAGCTGGAGAGTTCACAGCTTCTGTGTGGTTATGCTTGCAGTCCAGCTGATGTCCAGAGCAAAAAATATCCAGTTATTTGGTACACTAACAGTGTTTGAAATTTACATGGCCAAGAATCTGTAACTACACGTCTACATGTTTGACTGTAAATGATGTTCTTGTGATTATTCTtgagaataaatatattttgtttctaaaaagCAA
>XM_022684462.1
GCTCTGACGTCATTGTGCGGCGCCGGACGGGTCCTGGTTCTCGGGGTTACAGGAGAGCGGCGGCAGGGCGGCGGATCGCTGTGGTCTGTGTTGATTAAAGACCCGCAGAGACTCGACATGTACTACAAAGTCAGCGGAGTGACCGGCAGACTCACCGGATCCACCCCGGCCAGCGCCTACTGCCCGCAGGTAACCCGAAatctttgtatttttctttcacAGAAAGCTGATGGCGTGCCCATTCACCTGAAGCGTGGAGTCATGGACCGACTGCTGTACAGGACGACGATGGGTTTGACAATTGGCGGAACCCTCTACTGTCTAATGGCCCTGTACATTGCTGCCCAGCCCAGAAAACCTCAGTGACCTCAGTCATCTTCCCCATCTGGATTTAATGGAGTGTACAGGTGGGAGCAGCAAAGTGGACAATTAAGACTGTACTCCCAAAGACAGATGAATAATTGCTTTATTCCTGCCATGCTCTTTCACTTCCCCCATAACACATATTTATAACAAGAGGTCTGGTGTTATCACCTCAAGAAGTCTTGCAAGTacatctttttaaaacatgtgaaATACCTGTCAGGTCTCTCTGTCTGACTAACTTTGGTGGTTTGGACAAGGTTTAATGTTCTATTGCCTTTACAACCAAACCTCCAGCTGGTGAAACAGAGGCTTGTGGGCACACAgacttgttttaacactttttgatgAAAAGGACATTAAAATTAATGCGAACTTCACACACAGCTGGCACATTTAGTGAGTTTTCATACTTGGCAAGGCTTGTTCTCTTGTTCCATCAGCTGGAGAGTTCACAGCTTCTGTGTGGTTATGCTTGCAGTCCAGCTGATGTCCAGAGCAAAAAATATCCAGTTATTTGGTACACTAACAGTGTTTGAAATTTACATGGCCAAGAATCTGTAACTACACGTCTACATGTTTGACTGTAAATGATGTTCTTGTGATTATTCTtgagaataaatatattttgtttctaaaaagCAA

Function

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0005746 mitochondrial respirasome cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0003824 catalytic activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04260 Cardiac muscle contraction
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU298869 True 1045 lncRNA 0.46 2 29636061 29640401
XM_022684462.1 False 1008 mRNA 0.46 2 29636131 29640401

Neighbor

gene id symbol gene type direction distance location
LOC103047633 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 7391 29615105 ~ 29628670 (+)
LOC111195944 NA coding upstream 74221 29561192 ~ 29561840 (+)
LOC103022910 NA coding upstream 107975 29523340 ~ 29528086 (+)
LOC103021558 NA coding upstream 115086 29517504 ~ 29520975 (+)
LOC103023222 LOC103023222 coding upstream 120341 29514154 ~ 29515720 (+)
LOC103028857 LOC103028857,LOC108422795,LOC108262942,LOC107590000,LOC107728796,LOC107578331,LOC107696376,LOC107586467 coding downstream 509032 30149433 ~ 30153973 (+)
LOC103027087 LOC103027087,LOC108411988 coding downstream 807052 30447453 ~ 30467966 (+)
LOC103026410 qki,LOC107739475,LOC107696379,LOC107559772,LOC106605787 coding downstream 1004955 30645356 ~ 30851385 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding downstream 1284011 30924412 ~ 30942786 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding downstream 1321119 30961520 ~ 30970650 (+)
G220291 NA non-coding upstream 1070 29632622 ~ 29634991 (+)
G220288 NA non-coding upstream 69344 29566516 ~ 29566717 (+)
G220264 NA non-coding upstream 119300 29515986 ~ 29516761 (+)
G220258 NA non-coding upstream 145430 29490371 ~ 29490631 (+)
G220236 NA non-coding upstream 195743 29440026 ~ 29440318 (+)
G220314 NA non-coding downstream 4272 29644673 ~ 29644936 (+)
LOC103046096 NA non-coding downstream 106044 29746445 ~ 29753748 (+)
G220377 NA non-coding downstream 363250 30003651 ~ 30064776 (+)
G220388 NA non-coding downstream 442748 30083149 ~ 30083617 (+)
G220392 NA non-coding downstream 462050 30102451 ~ 30159792 (+)
G220194 NA other upstream 494043 29141367 ~ 29142018 (+)
G220074 NA other upstream 915400 28719256 ~ 28720661 (+)
plekhh2 plekhh2 other upstream 1084292 28490846 ~ 28551769 (+)
LOC111196018 NA other upstream 2399445 27200452 ~ 27236616 (+)
LOC103047652 NA other upstream 4193480 25438719 ~ 25442581 (+)
G220336 NA other downstream 147538 29787939 ~ 29793496 (+)
G220610 NA other downstream 1308611 30949012 ~ 30951941 (+)
G220800 NA other downstream 2096496 31736897 ~ 31738196 (+)
map10 NA other downstream 2644176 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 2862373 32502774 ~ 32578552 (+)

Expression


Co-expression Network