G220377


Basic Information

Item Value
gene id G220377
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30003651 ~ 30064776 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299002
TTGtcattatatacacatatatcatCATAAAAACCAAAAGCCATGTACATTTCAACTTTCATTTCATTGCTTTCCTTGAAAGCAGAGAACCATTTAATCCTTCACCTGTCAAGTAAAAGCTTCACATTTCCTTGGGAAATTCATAAACTGAGAAATTCACCTTGTTCATCACTGTAGTGAAAGCTTGGATCTCCACTCAGCGTAAGATGAAACAGATTCCACATTTTACACTGTTCATTACATTTGGTCAACAAAAGTatcattttcataaaaaaaaaacacatttcagcttcCCTCTCTTGGTATGAACTCTTTCGTAGCTGTTCCTGTTGCTCTGTTCTTGAGTCCTAATAATCCTGTCCCTAAACAGTACCATAACTTTGTTctgcacaaacaaataaacccTTTCAACCATTTGGAATCAAAGTGAAAGCTTTTATAAAGCTCAGCACGAGAATAAAGACCCTGTTAGACTCGAGAAAAAAAGTGCTGAAAACCGAAAAACAAGAAAGGAAAATGAGGAGCAGgaatggagggagggagggtttGAACAAAAGACTAGGAAGGAGATTGAACACATCTGCAGATATGGGCTGTATCAGACACACCAGCGCTGTGCGGATGGAACTTGACGTGGCATTGAGAAAGGATGCAATAAGGGAAATGGGGAGGAGGACAGGAAGAAGGGAGGAAGGAGAAGAAGAGTTAGGGGGAGACCTGATGATGTCTGGTGACTGAGTTGTTGGATGTGAGGACGTCTGCTAAAGGTGCAACACTAAGGTTGAACAATATGGAGAGAAATACCCTGTTTCTGAATGtactttcataaaaaaaacctttaaaacgTTTTAGATGCAAAACAAAGGCAGAATCATATGAGATTTTGACGATGTTTGCTTCAAAAACGATATACACTGATGGGATAGCAGTGCAGTGCTTAAACTGATTATACAGCCTGTGTAACagctcacacctgtataagttgtgaggtgttttcttgtggGTGAGGGTAAACACAGGCTAGCATACTCATGGCTAGCTGAAATTAattgttgagttgagttggagtGAAGCCTGACAGTGGGTGTCAGGATGATGGAACAATCCATTTCTTGAAATTGAAGCtgtgtgggcatttaacatttcatggtccacagtgtcacatgttttACTAGGAATCTGTCATATCATACATTTCCACACACAGTGGACATTGTACTGTCTGGTATTGATTGTGACTGGCCGTGTCTGGCTTGggttgtccatgtgaacagataCAAGTGACTCTGTCTAAAATCACAGCCATATCCAATGCAGGAAGACCTACACATATATCCTACTTCAGTACTGCATTTTTTAGCTTCAAGAGGACATAGCAAAATCATGGGATAAACTACTATAAATACTACCAATGTATTTCTCTGTAATGATAATTTAACCGCCATTTCTTAATACTAAAAATTAATTGTGAAAACGTCAGAtacactctaaaaaacagaggtacgaaaggagtactttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299002 True 1521 lncRNA 0.39 2 30003651 30064776

Neighbor

gene id symbol gene type direction distance location
LOC103047633 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 374981 29615105 ~ 29628670 (+)
LOC111195944 NA coding upstream 441811 29561192 ~ 29561840 (+)
LOC103022910 NA coding upstream 475565 29523340 ~ 29528086 (+)
LOC103021558 NA coding upstream 482676 29517504 ~ 29520975 (+)
LOC103023222 LOC103023222 coding upstream 487931 29514154 ~ 29515720 (+)
LOC103028857 LOC103028857,LOC108422795,LOC108262942,LOC107590000,LOC107728796,LOC107578331,LOC107696376,LOC107586467 coding downstream 84657 30149433 ~ 30153973 (+)
LOC103027087 LOC103027087,LOC108411988 coding downstream 382677 30447453 ~ 30467966 (+)
LOC103026410 qki,LOC107739475,LOC107696379,LOC107559772,LOC106605787 coding downstream 580580 30645356 ~ 30851385 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding downstream 859636 30924412 ~ 30942786 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding downstream 896744 30961520 ~ 30970650 (+)
LOC103046096 NA non-coding upstream 249903 29746445 ~ 29753748 (+)
G220314 NA non-coding upstream 358715 29644673 ~ 29644936 (+)
G220291 NA non-coding upstream 368660 29632622 ~ 29634991 (+)
G220288 NA non-coding upstream 436934 29566516 ~ 29566717 (+)
G220264 NA non-coding upstream 486890 29515986 ~ 29516761 (+)
G220388 NA non-coding downstream 18373 30083149 ~ 30083617 (+)
G220392 NA non-coding downstream 37675 30102451 ~ 30159792 (+)
G220407 NA non-coding downstream 121446 30186222 ~ 30188007 (+)
LOC111196026 NA non-coding downstream 786946 30851722 ~ 30861583 (+)
G220605 NA non-coding downstream 831352 30896128 ~ 30900415 (+)
G220336 NA other upstream 210155 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 363250 29636061 ~ 29640401 (+)
G220194 NA other upstream 861633 29141367 ~ 29142018 (+)
G220074 NA other upstream 1282990 28719256 ~ 28720661 (+)
plekhh2 plekhh2 other upstream 1451882 28490846 ~ 28551769 (+)
G220610 NA other downstream 884236 30949012 ~ 30951941 (+)
G220800 NA other downstream 1672121 31736897 ~ 31738196 (+)
map10 NA other downstream 2219801 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 2437998 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 2548698 32613474 ~ 32677285 (+)

Expression


Co-expression Network