G220605


Basic Information

Item Value
gene id G220605
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 30896128 ~ 30900415 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299272
cagttcattttaaagtataaaatcagcttgggccaggctatttccaggttttccttaaagtagaagactagtactctttagatcatgtgtatttggtctggcccatgattaaaaagtccttcaaaatcacactagaacatcagctttatattcaattttttgtgcattatggatcggtaggccatgttgccagttaattttaaagtataaaatcagctcgggccaggctaattccaggtttttcttaaagtagaagactagttctctttagatcatgtgtatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299272 True 283 lncRNA 0.35 2 30896128 30900415

Neighbor

gene id symbol gene type direction distance location
LOC103026410 qki,LOC107739475,LOC107696379,LOC107559772,LOC106605787 coding upstream 44743 30645356 ~ 30851385 (+)
LOC103027087 LOC103027087,LOC108411988 coding upstream 428162 30447453 ~ 30467966 (+)
LOC103028857 LOC103028857,LOC108422795,LOC108262942,LOC107590000,LOC107728796,LOC107578331,LOC107696376,LOC107586467 coding upstream 742155 30149433 ~ 30153973 (+)
LOC103047633 kcng3,LOC107758134,LOC107756869,LOC107590001,LOC107586474 coding upstream 1267458 29615105 ~ 29628670 (+)
LOC111195944 NA coding upstream 1334288 29561192 ~ 29561840 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding downstream 23997 30924412 ~ 30942786 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding downstream 61105 30961520 ~ 30970650 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838,LOC107696385 coding downstream 76988 30977403 ~ 30998498 (+)
dlk2 dlk2 coding downstream 343745 31244160 ~ 31282824 (+)
mea1 mea1 coding downstream 393766 31294181 ~ 31298256 (+)
LOC111196026 NA non-coding upstream 34545 30851722 ~ 30861583 (+)
G220407 NA non-coding upstream 708121 30186222 ~ 30188007 (+)
G220392 NA non-coding upstream 736336 30102451 ~ 30159792 (+)
G220388 NA non-coding upstream 812511 30083149 ~ 30083617 (+)
G220377 NA non-coding upstream 831352 30003651 ~ 30064776 (+)
G220624 NA non-coding downstream 221834 31122249 ~ 31176810 (+)
G220629 NA non-coding downstream 254715 31155130 ~ 31161593 (+)
G220640 NA non-coding downstream 271760 31172175 ~ 31175036 (+)
G220692 ppp2r5d,LOC106605890 non-coding downstream 406354 31306769 ~ 31308879 (+)
G220694 ppp2r5d non-coding downstream 424429 31324844 ~ 31330182 (+)
G220336 NA other upstream 1102632 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1255727 29636061 ~ 29640401 (+)
G220194 NA other upstream 1754110 29141367 ~ 29142018 (+)
G220074 NA other upstream 2175467 28719256 ~ 28720661 (+)
plekhh2 plekhh2 other upstream 2344359 28490846 ~ 28551769 (+)
G220610 NA other downstream 48597 30949012 ~ 30951941 (+)
G220800 NA other downstream 836482 31736897 ~ 31738196 (+)
map10 NA other downstream 1384162 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1602359 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1713059 32613474 ~ 32677285 (+)

Expression


Co-expression Network