G220629


Basic Information

Item Value
gene id G220629
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31155130 ~ 31161593 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299306
TGTAACCCTGGTAAAATAAGCACTCTTTGGGTAAAGCCATTCTGAGGAGCCTGTGTGTAGACCCCTCCCACTTTtccctctctcccactctcccctctctccaccctcttctctctctaccttgctCTCTCCCAGCGTGTGTGTGCTGCACGGAGCTGGAGATAAATGTCCATTTTGTGTGTGAGGAAATATTGAGTAAAGACGCTGTTTAAACTGTACTACAGTGATACACAAGTACCCTCGTTGGAGATTTTTTTAGTTATCAACCGAGTTGGATAAACTTTTGCGCTGTTTGATTGAGGGAGACTCCGGTGAGTTCATATATTGCTGATTAGGAAAGAGTTTGCGAATATAACTTAGTGTTTTCATGTTCTAAGCTGTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299306 True 384 lncRNA 0.44 2 31155130 31161593

Neighbor

gene id symbol gene type direction distance location
lrrc73 lrrc73,LOC107728077,LOC106605838,LOC107696385 coding upstream 156632 30977403 ~ 30998498 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding upstream 184480 30961520 ~ 30970650 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding upstream 212344 30924412 ~ 30942786 (+)
LOC103026410 qki,LOC107739475,LOC107696379,LOC107559772,LOC106605787 coding upstream 303745 30645356 ~ 30851385 (+)
LOC103027087 LOC103027087,LOC108411988 coding upstream 687164 30447453 ~ 30467966 (+)
dlk2 dlk2 coding downstream 82567 31244160 ~ 31282824 (+)
mea1 mea1 coding downstream 132588 31294181 ~ 31298256 (+)
trnak-cuu_12 NA coding downstream 231141 31392734 ~ 31392806 (+)
trnaa-agc_18 NA coding downstream 242114 31403707 ~ 31403779 (+)
trnag-gcc_3 NA coding downstream 253307 31414900 ~ 31414970 (+)
G220605 NA non-coding upstream 254715 30896128 ~ 30900415 (+)
LOC111196026 NA non-coding upstream 293547 30851722 ~ 30861583 (+)
G220407 NA non-coding upstream 967123 30186222 ~ 30188007 (+)
G220392 NA non-coding upstream 995338 30102451 ~ 30159792 (+)
G220388 NA non-coding upstream 1071513 30083149 ~ 30083617 (+)
G220640 NA non-coding downstream 10582 31172175 ~ 31175036 (+)
G220692 ppp2r5d,LOC106605890 non-coding downstream 145176 31306769 ~ 31308879 (+)
G220694 ppp2r5d non-coding downstream 163251 31324844 ~ 31330182 (+)
G220700 NA non-coding downstream 172662 31334255 ~ 31334543 (+)
G220702 NA non-coding downstream 178298 31339891 ~ 31342707 (+)
G220610 NA other upstream 203189 30949012 ~ 30951941 (+)
G220336 NA other upstream 1361634 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1514729 29636061 ~ 29640401 (+)
G220194 NA other upstream 2013112 29141367 ~ 29142018 (+)
G220074 NA other upstream 2434469 28719256 ~ 28720661 (+)
G220800 NA other downstream 575304 31736897 ~ 31738196 (+)
map10 NA other downstream 1122984 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1341181 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1451881 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 2052035 33213628 ~ 33232791 (+)

Expression


Co-expression Network