G220692 (ppp2r5d,LOC106605890)


Basic Information

Item Value
gene id G220692
gene name ppp2r5d,LOC106605890
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31306769 ~ 31308879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299413
GCTTACTTGTTCCAGTGGCTCTTGGAGTTCTTATAAAGGGCAGGGAACATGATGGGCAGGATTTTGGCAGCATTGTCACTGATTAAGCTCATGATGTACTCATTGTTCCAGTAATACAGTGCCCTTTCAGCAACCTGGAAGTGTGGACTCGATACACACTTGGCCAGCTGTCTAAACAAAGGCTCCATAACTTTGACAAACTCAGAAGGCTCAATGACATCCAGGATCTCCTCCAACTCATTCAAGAACATCACCTCTTTAGGACTGTGAGTCTTGGGCCAGAACTTCAAAAGACCCATTATAACTGGTTCAGTGAGGCTGCTGTCCTTTTCCAAAAACTGCACCACACAGTATGCCAGCTGAGGGTGATAGACACTAAGAGACTTGACTTTGTGTAGAGGCAGCAGAACCCGGATCAGGAACATTTTGTGCTCCTCTTTCAGCGGCAGGGCAAAGCCATTAATTATACTGTGAGACGAACAGGATACACAGCTCTGGTCATGTGACATTCCAGGTCCATTCAATTCAATACAGATAAGAGAGAGGTCTTCTATTTACTCAGGTTTGTCATGGCAACAGTGGCAGTACACGCACTCACCTTCCTAAGATTTCTAAGAGCTCCGCAATGCCATTGTG

Function

symbol description
ppp2r5d Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta).

NR:

description
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299413 True 636 lncRNA 0.46 4 31306769 31308879

Neighbor

gene id symbol gene type direction distance location
mea1 mea1 coding upstream 8513 31294181 ~ 31298256 (+)
dlk2 dlk2 coding upstream 23945 31244160 ~ 31282824 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838,LOC107696385 coding upstream 308271 30977403 ~ 30998498 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding upstream 336119 30961520 ~ 30970650 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding upstream 363983 30924412 ~ 30942786 (+)
trnak-cuu_12 NA coding downstream 83855 31392734 ~ 31392806 (+)
trnaa-agc_18 NA coding downstream 94828 31403707 ~ 31403779 (+)
trnag-gcc_3 NA coding downstream 106021 31414900 ~ 31414970 (+)
trnag-gcc_5 NA coding downstream 113873 31422752 ~ 31422822 (+)
trnak-cuu_13 NA coding downstream 119361 31428240 ~ 31428312 (+)
G220624 NA non-coding upstream 129959 31122249 ~ 31176810 (+)
G220640 NA non-coding upstream 131733 31172175 ~ 31175036 (+)
G220629 NA non-coding upstream 145176 31155130 ~ 31161593 (+)
G220605 NA non-coding upstream 406354 30896128 ~ 30900415 (+)
LOC111196026 NA non-coding upstream 445186 30851722 ~ 30861583 (+)
G220694 ppp2r5d non-coding downstream 15965 31324844 ~ 31330182 (+)
G220700 NA non-coding downstream 25376 31334255 ~ 31334543 (+)
G220702 NA non-coding downstream 31012 31339891 ~ 31342707 (+)
G220750 NA non-coding downstream 207251 31516130 ~ 31520497 (+)
G220781 NA non-coding downstream 238861 31547740 ~ 31548009 (+)
G220610 NA other upstream 354828 30949012 ~ 30951941 (+)
G220336 NA other upstream 1513273 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1666368 29636061 ~ 29640401 (+)
G220194 NA other upstream 2164751 29141367 ~ 29142018 (+)
G220074 NA other upstream 2586108 28719256 ~ 28720661 (+)
G220800 NA other downstream 428018 31736897 ~ 31738196 (+)
map10 NA other downstream 975698 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1193895 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1304595 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 1904749 33213628 ~ 33232791 (+)

Expression


Co-expression Network