G220694 (ppp2r5d)


Basic Information

Item Value
gene id G220694
gene name ppp2r5d
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31324844 ~ 31330182 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299416
CTCCAGTGGTATAAACCtaaaaacgtttaaaaaataatgtaatcatcattatcattcaGCTTTTAATAATTTGTGTTGTATTAAGCTCAAGATCACAGTACCTTTGAGGGCGGGAAGCTTCTGTAGCTCACGGTTCTTGCTGAGGTTAAAGCGTGAAGAGCTCTGTCGGCGTTCCTTCTTGACAATCTGTGGGCCACCAGAGTACTTGATTTTGTTGAGCTGAGTTGGAGGTGGAGTGCTGTTGCTAGGACGTTTACTAgcggtctgctgctgctgtgcCTCATCTGAATTTTCAGTTCCAGTATCTTTCCCACCGCCGACGTTACTGTTCTTGGTGCTGCTTTTTGCAGATTTCGGCGTTTCcttttcttttttagttttattcggCATCTTGCAGATGTTCTTGTCTTATTTTCACGGCAGCTCCGTGACAGATTCTGCAGCACTTGGCGCTCGTCTCTCTcagtacctctctctctctctctctcacacaccgcCTCACTGCGCTCCCCTGCAGGCCGAGCACATTTCCATTGGTCCGGGCTGAGCGACACGGCCTGGAG

Function

symbol description
ppp2r5d Predicted to enable protein phosphatase activator activity. Predicted to be involved in protein dephosphorylation. Predicted to act upstream of or within signal transduction. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytosol and nucleus. Human ortholog(s) of this gene implicated in autosomal dominant non-syndromic intellectual disability 35. Orthologous to human PPP2R5D (protein phosphatase 2 regulatory subunit B'delta).

NR:

description
PREDICTED: serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299416 True 563 lncRNA 0.48 3 31324844 31330182

Neighbor

gene id symbol gene type direction distance location
mea1 mea1 coding upstream 26588 31294181 ~ 31298256 (+)
dlk2 dlk2 coding upstream 42020 31244160 ~ 31282824 (+)
lrrc73 lrrc73,LOC107728077,LOC106605838,LOC107696385 coding upstream 326346 30977403 ~ 30998498 (+)
yipf3 yipf3,LOC107696384,LOC107728076 coding upstream 354194 30961520 ~ 30970650 (+)
LOC103025585 LOC108422886,LOC108263229,LOC107669571,LOC107565600,LOC107739474 coding upstream 382058 30924412 ~ 30942786 (+)
trnak-cuu_12 NA coding downstream 62552 31392734 ~ 31392806 (+)
trnaa-agc_18 NA coding downstream 73525 31403707 ~ 31403779 (+)
trnag-gcc_3 NA coding downstream 84718 31414900 ~ 31414970 (+)
trnag-gcc_5 NA coding downstream 92570 31422752 ~ 31422822 (+)
trnak-cuu_13 NA coding downstream 98058 31428240 ~ 31428312 (+)
G220692 ppp2r5d,LOC106605890 non-coding upstream 15965 31306769 ~ 31308879 (+)
G220624 NA non-coding upstream 148034 31122249 ~ 31176810 (+)
G220640 NA non-coding upstream 149808 31172175 ~ 31175036 (+)
G220629 NA non-coding upstream 163251 31155130 ~ 31161593 (+)
G220605 NA non-coding upstream 424429 30896128 ~ 30900415 (+)
G220700 NA non-coding downstream 4073 31334255 ~ 31334543 (+)
G220702 NA non-coding downstream 9709 31339891 ~ 31342707 (+)
G220750 NA non-coding downstream 185948 31516130 ~ 31520497 (+)
G220781 NA non-coding downstream 217558 31547740 ~ 31548009 (+)
G220788 NA non-coding downstream 272876 31603058 ~ 31603325 (+)
G220610 NA other upstream 372903 30949012 ~ 30951941 (+)
G220336 NA other upstream 1531348 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 1684443 29636061 ~ 29640401 (+)
G220194 NA other upstream 2182826 29141367 ~ 29142018 (+)
G220074 NA other upstream 2604183 28719256 ~ 28720661 (+)
G220800 NA other downstream 406715 31736897 ~ 31738196 (+)
map10 NA other downstream 954395 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 1172592 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 1283292 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 1883446 33213628 ~ 33232791 (+)

Expression


Co-expression Network