G220828 (meis1,LOC108423396,LOC107582672,LOC107717834)


Basic Information

Item Value
gene id G220828
gene name meis1,LOC108423396,LOC107582672,LOC107717834
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 31953861 ~ 31960300 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299602
tcacatatttttttccttttaaacgCAAGGTGATTTAGGGAGGAGGTCAAAAGTCTATGGAGATGGCACACACATAGTGTGGAAAGAAAAAAGTTCacatcctttttaaaaaaaaatctattagaaACAACATAATATGCAGAACAATACGATAGCATTTACAATACTTAATTCCCAGTTCTCATATGAGTCCAAAATTTTACAACAGTATACAGATTCGCCTCCTCCCTCCCCCTTTAGGAGTTGATATAGTAATAATttcaatctttctctttctcttggtTTGATCTCCTCTCTTTGTGTAGGGCACATCCATTGTGAGTGTCCCATGGTGCGCAGAGGCTGGCTCCTTTCTTAAACCCAGTTCATGCTTAAGAACggagctcttcagtttctgcaGCAGAGTCAGCACATAATAGTTGCCGGATGAGCACCAGAAACAAACCAATCGCAGTTCCCTGTCTCGAGCACGGCCGTATCGAGGGTCCGTTTGTTGTAGCAAACTACTGGGCGTGGATGTCCATGACTTGTCCGCCCATGGTGGGGTCTCCTGGGGGAAGCATAGGGGGGCTTGAGGCTGACATGGGCATGGCAGGGTGGGGTGGTCCTCCATGCATCAACATTGCTGAGTGCTGGGGGTGTCCAGGAATGTAGGAACGCATGGGAGGCCCAGGCCGCAGCTGGCCGGAGTGGTGGGGGAGCTGGGGGCCGCCGTAGGCTGGCTGGCCCATGCCCATGGCCATCGTGCCGCTGTGACACAGGTAGTCCCCTGGCATGCCCTGCAGTCTTCCCCCATTGCTTTGCGATTGGTTAACTAGAAGGTTACATGTAGTGCCACTGTCCCTCCATGCCCATATTCATGCCCATCCCACTCATAGGCCCAGGTGGTCTGATTCCCATGTGCTGCTGGCCGTCCATCACGAAGCCTCCCATGGGCTGACCATCTGGGTTGTAGGGAGCTCCTTGACTTACTGTAGGAGGACGGGGGAGGGCACAGGACAGTGGTCAATTAGTGCTTTTAATTAAGTTTCCTTCGCTTAACATCATCTGGTAACGGACACATGGACTAATGCTTCTTAGCTCCCTCACTGTCGTAAGCGATTACGCTTCATACAtatcaaattaaatttaaagaacTTAGCATGGAACAAATCCTCCAAGAAATTTAACAGATGATATTTAAGAAGCTGTGTTGCAT

Function

symbol description
meis1 Enables DNA binding activity. Predicted to be involved in several processes, including angiogenesis; animal organ development; and negative regulation of myeloid cell differentiation. Predicted to act upstream of or within several processes, including hemopoiesis; lens morphogenesis in camera-type eye; and negative regulation of neuron differentiation. Predicted to be located in nucleus. Predicted to be part of chromatin.

NR:

description
homeobox protein Meis1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299602 True 1198 lncRNA 0.49 3 31953861 31960300

Neighbor

gene id symbol gene type direction distance location
c1d c1d coding upstream 428518 31522285 ~ 31525343 (+)
psap psap coding upstream 498031 31443031 ~ 31455830 (+)
mrps6 mrps6 coding upstream 517332 31430280 ~ 31436529 (+)
trnak-cuu_13 NA coding upstream 525549 31428240 ~ 31428312 (+)
trnag-gcc_5 NA coding upstream 531039 31422752 ~ 31422822 (+)
ntpcr ntpcr coding downstream 329552 32289852 ~ 32296881 (+)
golga4 NA coding downstream 761805 32722105 ~ 32776771 (+)
itga9 itga9,LOC107679186,LOC107688464 coding downstream 819244 32779544 ~ 32905463 (+)
LOC111196032 NA coding downstream 951481 32911781 ~ 32921578 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding downstream 986116 32946416 ~ 32973568 (+)
G220802 NA non-coding upstream 206972 31745630 ~ 31746889 (+)
G220795 NA non-coding upstream 301937 31650913 ~ 31651924 (+)
G220788 NA non-coding upstream 350536 31603058 ~ 31603325 (+)
G220781 NA non-coding upstream 405852 31547740 ~ 31548009 (+)
G220750 NA non-coding upstream 433364 31516130 ~ 31520497 (+)
G220830 NA non-coding downstream 29728 31990028 ~ 32023901 (+)
G220851 NA non-coding downstream 136784 32097084 ~ 32097352 (+)
G220859 NA non-coding downstream 224653 32184953 ~ 32187166 (+)
G220862 NA non-coding downstream 270610 32230910 ~ 32237552 (+)
G220879 NA non-coding downstream 339032 32299332 ~ 32299534 (+)
G220800 NA other upstream 215665 31736897 ~ 31738196 (+)
G220610 NA other upstream 1001920 30949012 ~ 30951941 (+)
G220336 NA other upstream 2160365 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 2313460 29636061 ~ 29640401 (+)
G220194 NA other upstream 2811843 29141367 ~ 29142018 (+)
map10 NA other downstream 324277 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 542474 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 653174 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 1253328 33213628 ~ 33232791 (+)
G221292 NA other downstream 1483817 33444117 ~ 33444721 (+)

Expression


Co-expression Network