G220862


Basic Information

Item Value
gene id G220862
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32230910 ~ 32237552 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299643
CAGTAGGAGGAGCGTCGTCTGGCCGCCCAATAGATCTTCCCCGCTGGATCTTCACCCGCCAATGACCTGCATGTTCTGACCGGATGGGGCGGGCCTTTTCAAATATAACGCAGCTCACTCGCGTCAGTCGGGAGATGAGAGCTGAGAGGAAAGACCTGTGTTTGCGAGAGCTGTGATTATTtaagctgtttctgtctgtttctgtgtttcctgAGAATAGTTGTGAGTAGTGGATGTTTGGCTGAAAGTGGAGTAGGTAGTTTGTTTCTGTGAGAGTGAGGTGTTTGTCTGAGTGTTCTCCCTCCCTCACCCTCCACTCTGTTGCACTTTGGTGGACAGATAAGTTGGGCCCTTCACATTATTCATCACGTAGGTAACACAATGTCTAGACACACCAGGTAAGGGGCGGGTGCCACTATTGtatttttggtttagtttagtttttgggTTAGGTAGTTTAGCActtgtattattttctttcctttGGCACCGTCCACAGTCCACCTTAGGCATTTTGGTTTGAAGAAACGgcttattgattattattattattattattattattattattattattaatatt
>TU299644
CAGTAGGAGGAGCGTCGTCTGGCCGCCCAATAGATCTTCCCCGCTGGATCTTCACCCGCCAATGACCTGCATGTTCTGACCGGATGGGGCGGGCCTTTTCAAATATAACGCAGCTCACTCGCGTCAGTCGGGAGATGAGAGCTGAGAGGAAAGACCTGTGTTTGCGAGAGCTGTGATTATTtaagctgtttctgtctgtttctgtgtttcctgAGAATAGTTGTGAGTAGTGGATGTTTGGCTGAAAGTGGAGTAGGTAGTTTGTTTCTGTGAGAGTGAGGTGTTTGTCTGAGTGTTCTCCCTCCCTCACCCTCCACTCTGTTGCACTTTGGTGGACAGATAAGTTGGGCCCTTCACATTATTCATCACGTAGGTAACACAATGTCTAGACACACCAGGTAAGGGGCGGGTGCCACTATTGtatttttggtttagtttagtttttgggTTAGGTAGTTTAGCActtgtattattttctttcctttGGCACCGTCCACAGTCCACCTTAGGCATTTTGGTTTGAAGAAACGgcttattgattattattattattattattattattattattattattaatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299643 True 583 lncRNA 0.44 2 32230910 32237552
TU299644 False 583 lncRNA 0.44 2 32230910 32237552

Neighbor

gene id symbol gene type direction distance location
c1d c1d coding upstream 705567 31522285 ~ 31525343 (+)
psap psap coding upstream 775080 31443031 ~ 31455830 (+)
mrps6 mrps6 coding upstream 794381 31430280 ~ 31436529 (+)
trnak-cuu_13 NA coding upstream 802598 31428240 ~ 31428312 (+)
trnag-gcc_5 NA coding upstream 808088 31422752 ~ 31422822 (+)
ntpcr ntpcr coding downstream 52300 32289852 ~ 32296881 (+)
golga4 NA coding downstream 484553 32722105 ~ 32776771 (+)
itga9 itga9,LOC107679186,LOC107688464 coding downstream 541992 32779544 ~ 32905463 (+)
LOC111196032 NA coding downstream 674229 32911781 ~ 32921578 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding downstream 708864 32946416 ~ 32973568 (+)
G220859 NA non-coding upstream 43744 32184953 ~ 32187166 (+)
G220851 NA non-coding upstream 133558 32097084 ~ 32097352 (+)
G220830 NA non-coding upstream 207009 31990028 ~ 32023901 (+)
G220828 meis1,LOC108423396,LOC107582672,LOC107717834 non-coding upstream 270610 31953861 ~ 31960300 (+)
G220802 NA non-coding upstream 484021 31745630 ~ 31746889 (+)
G220879 NA non-coding downstream 61780 32299332 ~ 32299534 (+)
G220881 NA non-coding downstream 65049 32302601 ~ 32303879 (+)
G220882 NA non-coding downstream 66743 32304295 ~ 32305661 (+)
G220891 NA non-coding downstream 101473 32339025 ~ 32340292 (+)
G220894 NA non-coding downstream 107225 32344777 ~ 32391273 (+)
G220800 NA other upstream 492714 31736897 ~ 31738196 (+)
G220610 NA other upstream 1278969 30949012 ~ 30951941 (+)
G220336 NA other upstream 2437414 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 2590509 29636061 ~ 29640401 (+)
G220194 NA other upstream 3088892 29141367 ~ 29142018 (+)
map10 NA other downstream 47025 32284577 ~ 32288850 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 265222 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 375922 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 976076 33213628 ~ 33232791 (+)
G221292 NA other downstream 1206565 33444117 ~ 33444721 (+)

Expression


Co-expression Network