G220881


Basic Information

Item Value
gene id G220881
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32302601 ~ 32303879 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299670
TGtgtggtggaaaataatgacaggaagaaagaaatattcagagtctctgagtcttgatcagaatgagtaacaagatttattgagAAGCCACACGTAATGAATACAGAGTGAACTCCTGCCTTGCAAGAGGTGCCAAGCTCTCTTATACCTTTTAGATCCTCCATCCCTTACTTCCCGCAATTATGGGCACAGTGCCACCATTGTGACACGTCAACTTCTTCTGACATGTGATATGACATAATCCCTTAGTGAGCATATCAGGCTGGTTCTCAAAACATTGCAAGCAGAAAGGAAGATGACCCTGGCGCCAGAATTTGTAGAACAACTGTGACGTGCATTCcttaacacatacacatagcCAGATAGAGAAAACTCTTACTCAGCATTTCAAAAAAGCTCACTGAGGGTAGAATGTTCACAGTACACATTATCATCGCATAGaacaaaaagtaatatcattaatagtcgTCATTGTCTATGAATCATCACACGtcattgattatgaatcatttcaataaacaccTTCCATCACACTCCCCCCTTTGATTCTGAATCAATAAtgaaattttctttttacagctaATTTTCTTTATCTTCATTAAACAAACGGTCTAGCCCAAATGCAGTATCTAACTCtattgtatctactgtaacttgcAGGAACTGGCCTTTCTTCTGCATATGGCGGAACaaaaattaatagatatatattagaaaagagtaaaagtacatcaacaaataaaatctCGATAGGTCAACACAttcgcgcgagagagagagagagagagagaaagaaagaaataaactaaagccAGTCGAGGGCCAGAGAGAATTCCTCATacttcatccaagcagttatacattttgcaaatgacatgtgattgtacagaacttatcaatatgattacgtcagcagagtccagttaacagcatgttgtccagttttaatgacgtgattagctccagcctgtctgagcaacaagttcttatcatgatgttgttcagcactgtgtgcttcatgaacacagcagacagtccttaagtgtcctaaagtctgtgaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299670 True 1062 lncRNA 0.39 2 32302601 32303879

Neighbor

gene id symbol gene type direction distance location
ntpcr ntpcr coding upstream 5720 32289852 ~ 32296881 (+)
c1d c1d coding upstream 777258 31522285 ~ 31525343 (+)
psap psap coding upstream 846771 31443031 ~ 31455830 (+)
mrps6 mrps6 coding upstream 866072 31430280 ~ 31436529 (+)
trnak-cuu_13 NA coding upstream 874289 31428240 ~ 31428312 (+)
golga4 NA coding downstream 418226 32722105 ~ 32776771 (+)
itga9 itga9,LOC107679186,LOC107688464 coding downstream 475665 32779544 ~ 32905463 (+)
LOC111196032 NA coding downstream 607902 32911781 ~ 32921578 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding downstream 642537 32946416 ~ 32973568 (+)
acoxl acoxl coding downstream 806080 33109959 ~ 33210737 (+)
G220879 NA non-coding upstream 3067 32299332 ~ 32299534 (+)
G220862 NA non-coding upstream 65049 32230910 ~ 32237552 (+)
G220859 NA non-coding upstream 115435 32184953 ~ 32187166 (+)
G220851 NA non-coding upstream 205249 32097084 ~ 32097352 (+)
G220830 NA non-coding upstream 278700 31990028 ~ 32023901 (+)
G220882 NA non-coding downstream 416 32304295 ~ 32305661 (+)
G220891 NA non-coding downstream 35146 32339025 ~ 32340292 (+)
G220894 NA non-coding downstream 40898 32344777 ~ 32391273 (+)
G220904 NA non-coding downstream 70284 32374163 ~ 32375370 (+)
G220916 NA non-coding downstream 157552 32461431 ~ 32462921 (+)
map10 NA other upstream 13751 32284577 ~ 32288850 (+)
G220800 NA other upstream 564405 31736897 ~ 31738196 (+)
G220610 NA other upstream 1350660 30949012 ~ 30951941 (+)
G220336 NA other upstream 2509105 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 2662200 29636061 ~ 29640401 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 198895 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 309595 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 909749 33213628 ~ 33232791 (+)
G221292 NA other downstream 1140238 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 1858702 34162581 ~ 34183237 (+)

Expression


Co-expression Network