G220924


Basic Information

Item Value
gene id G220924
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32494938 ~ 32495315 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299731
aataaaaacggtaattaaaaggaaaaaacataactatctcaaactgtattttgtgtttataaaactaactaaaacgaactaaaattactgaattttcgtgtttaatttatttataagagctgttgtacagcggagttgtacagcgggcggtgttgccGAGCGCGCAAcacctcgtggtccgtggcgttagttcttgtgtaaagcgctcacgctagccgcaaaatacgacagaaaacactgaaaaactgcagaactatgtatgggattacaatatgagcgcaaggcagatgaaagagaaacaggagattcagtatgtgagaacatttacctgtgagtagctcattccagaacaagcaaatatttctctctctctctctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299731 True 378 lncRNA 0.39 1 32494938 32495315

Neighbor

gene id symbol gene type direction distance location
ntpcr ntpcr coding upstream 198057 32289852 ~ 32296881 (+)
c1d c1d coding upstream 969595 31522285 ~ 31525343 (+)
psap psap coding upstream 1039108 31443031 ~ 31455830 (+)
mrps6 mrps6 coding upstream 1058409 31430280 ~ 31436529 (+)
trnak-cuu_13 NA coding upstream 1066626 31428240 ~ 31428312 (+)
golga4 NA coding downstream 226790 32722105 ~ 32776771 (+)
itga9 itga9,LOC107679186,LOC107688464 coding downstream 284229 32779544 ~ 32905463 (+)
LOC111196032 NA coding downstream 416466 32911781 ~ 32921578 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding downstream 451101 32946416 ~ 32973568 (+)
acoxl acoxl coding downstream 614644 33109959 ~ 33210737 (+)
G220919 NA non-coding upstream 2933 32491723 ~ 32492005 (+)
G220916 NA non-coding upstream 32017 32461431 ~ 32462921 (+)
G220894 NA non-coding upstream 103665 32344777 ~ 32391273 (+)
G220904 NA non-coding upstream 119568 32374163 ~ 32375370 (+)
G220891 NA non-coding upstream 154646 32339025 ~ 32340292 (+)
G220926 NA non-coding downstream 90028 32585343 ~ 32585633 (+)
G220940 NA non-coding downstream 189924 32685239 ~ 32685607 (+)
LOC111196029 NA non-coding downstream 214583 32709898 ~ 32711625 (+)
G221036 NA non-coding downstream 224948 32720263 ~ 32720671 (+)
G221090 NA non-coding downstream 412155 32907470 ~ 32960375 (+)
map10 NA other upstream 206088 32284577 ~ 32288850 (+)
G220800 NA other upstream 756742 31736897 ~ 31738196 (+)
G220610 NA other upstream 1542997 30949012 ~ 30951941 (+)
G220336 NA other upstream 2701442 29787939 ~ 29793496 (+)
LOC103047316 NA other upstream 2854537 29636061 ~ 29640401 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other downstream 7459 32502774 ~ 32578552 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other downstream 118159 32613474 ~ 32677285 (+)
bcl2l11 bcl2l11 other downstream 718313 33213628 ~ 33232791 (+)
G221292 NA other downstream 948802 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 1667266 34162581 ~ 34183237 (+)

Expression


Co-expression Network