G221090


Basic Information

Item Value
gene id G221090
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 32907470 ~ 32960375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU299942
cacactttcaagctaataaaactttaataatattcacataacttatcattttaagttaaccatgggtattctcaacatatttactatattatttaactaccaatactgacagtataatactgaAGCAGTAcaggagtaaactcagtaaagagtgaactctgtagctcaaagccagcatactgtgatcactaggaacacagaataaagttaatgtgctcttacagctctacaacactgagacctgccaatcaacatgtatattataattactgcacgcccaggataaggtagttttgggcaacagacaacacaaagatggtaagtaagggagaggccacacccaatatgcaaatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU299942 True 356 lncRNA 0.35 2 32907470 32960375

Neighbor

gene id symbol gene type direction distance location
itga9 itga9,LOC107679186,LOC107688464 coding upstream 2007 32779544 ~ 32905463 (+)
golga4 NA coding upstream 130699 32722105 ~ 32776771 (+)
ntpcr ntpcr coding upstream 610589 32289852 ~ 32296881 (+)
c1d c1d coding upstream 1382127 31522285 ~ 31525343 (+)
psap psap coding upstream 1451640 31443031 ~ 31455830 (+)
acoxl acoxl coding downstream 149584 33109959 ~ 33210737 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding downstream 494401 33454776 ~ 33458782 (+)
LOC103021397 NA coding downstream 1833708 34794083 ~ 34829457 (+)
l2hgdh l2hgdh coding downstream 1884119 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 1902763 34863138 ~ 34892584 (+)
G221036 NA non-coding upstream 186799 32720263 ~ 32720671 (+)
LOC111196029 NA non-coding upstream 195845 32709898 ~ 32711625 (+)
G220940 NA non-coding upstream 221863 32685239 ~ 32685607 (+)
G220926 NA non-coding upstream 321837 32585343 ~ 32585633 (+)
G220924 NA non-coding upstream 412155 32494938 ~ 32495315 (+)
G221101 tmem87b,LOC107754578,LOC107679197,LOC107597636,LOC107688162 non-coding downstream 23066 32983441 ~ 32985180 (+)
G221103 tmem87b,LOC107688162 non-coding downstream 26255 32986630 ~ 32992463 (+)
G221105 NA non-coding downstream 32196 32992571 ~ 32997092 (+)
G221107 mertk non-coding downstream 43166 33003541 ~ 33013829 (+)
G221168 NA non-coding downstream 185540 33145915 ~ 33158040 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 230185 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 328918 32502774 ~ 32578552 (+)
map10 NA other upstream 618620 32284577 ~ 32288850 (+)
G220800 NA other upstream 1169274 31736897 ~ 31738196 (+)
G220610 NA other upstream 1955529 30949012 ~ 30951941 (+)
bcl2l11 bcl2l11 other downstream 253253 33213628 ~ 33232791 (+)
G221292 NA other downstream 483742 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 1202206 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 2026624 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 2058067 35018442 ~ 35025598 (+)

Expression


Co-expression Network