G221259


Basic Information

Item Value
gene id G221259
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33352741 ~ 33423199 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300175
aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatacaaaaaaaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300175 True 451 lncRNA 0.02 2 33352741 33423199

Neighbor

gene id symbol gene type direction distance location
acoxl acoxl coding upstream 142004 33109959 ~ 33210737 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding upstream 379173 32946416 ~ 32973568 (+)
LOC111196032 NA coding upstream 431163 32911781 ~ 32921578 (+)
itga9 itga9,LOC107679186,LOC107688464 coding upstream 447278 32779544 ~ 32905463 (+)
golga4 NA coding upstream 575970 32722105 ~ 32776771 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding downstream 31577 33454776 ~ 33458782 (+)
LOC103021397 NA coding downstream 1370884 34794083 ~ 34829457 (+)
l2hgdh l2hgdh coding downstream 1421295 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 1439939 34863138 ~ 34892584 (+)
cdkn3 cdkn3 coding downstream 1503085 34926284 ~ 34932635 (+)
G221217 NA non-coding upstream 40138 33290534 ~ 33312603 (+)
G221216 NA non-coding upstream 62868 33287419 ~ 33289873 (+)
G221198 NA non-coding upstream 102371 33246592 ~ 33250370 (+)
G221168 NA non-coding upstream 194701 33145915 ~ 33158040 (+)
G221169 NA non-coding upstream 197252 33152456 ~ 33155489 (+)
G221298 NA non-coding downstream 39985 33463184 ~ 33463392 (+)
G221308 NA non-coding downstream 69710 33492909 ~ 33494218 (+)
G221315 NA non-coding downstream 92453 33515652 ~ 33516194 (+)
G221321 NA non-coding downstream 206247 33629446 ~ 33629680 (+)
G221324 NA non-coding downstream 208887 33632086 ~ 33636648 (+)
bcl2l11 bcl2l11 other upstream 119950 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 675456 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 774189 32502774 ~ 32578552 (+)
map10 NA other upstream 1063891 32284577 ~ 32288850 (+)
G220800 NA other upstream 1614545 31736897 ~ 31738196 (+)
G221292 NA other downstream 20918 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 739382 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 1563800 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 1595243 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 1785232 35208431 ~ 35218378 (+)

Expression


Co-expression Network