LOC111196033


Basic Information

Item Value
gene id LOC111196033
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33371506 ~ 33374468 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300181
TGTTCGGAGAAAAGACGCTAAAATTGGCTCTCAGattgaatgaactgaatgaataTACAGGTTATGGTTTGCCCTCGTTTCTTGGACGGAGGGACCAATGCAGTGAGCACTGTGTCAACCAGCTGGATAACTGACTCTGACCCAACAGAAACCTCCCCGCAGTCCTTCTAAAGTTATCTGGCAAGGAAGGCACCATCACTGTCTCAGCCCATTGTTGGAAGACTGCAAAAGCACAAGCTACAGCCAGTGGGACGGCACGAGTGCTACTGATGGAACTCTTTAATGTTGATGTTTTTCTGAA
>XR_002651980.1
ttgcaaGAAAAACAAGCATTAGCTATGGTCAGTGTGAGTGAATCACCACATACAACAGTTCCTGTAAATGTGCTGTGTCTCAGTTGTAACCTGCTGAAAATACCCTCCCTCTCCTTAAATCATAATTGTTACATTTTCAGTTTGAAGAGTGAGCAAAAATGTACCCGTGGTTTTCAGACAAGCCAAATTTGGCAGTATAAccgcgaacctggcaactctggggAAAAGCGTTCTGTGATTGGACTGCAAGAGCAGAAGATTTAGACAAACAAGTATCAGCAGTTACAGCGCGATAGGGCGGGACTAGGCTTTGGATGATGTTCGGAGAAAAGACGCTAAAATTGGCTCTCAGattgaatgaactgaatgaataTACAGGTTATGGTTTGCCCTCGTTTCTTGGACGGAGGGACCAATGCAGTGAGCACTGTGTCAACCAGCTGGATAACTGACTCTGACCCAACAGAAACCTCCCCGCAGTCCTTCTAAAGTTATCTGGCAAGGTGAAACTGGGGAAGGAAGGCACCATCACTGTCTCAGCCCATTGTTGGAAGACTGCAAAAGCACAAGCTACAGCCAGTGGGACGGCACGAGTGCTACTGATGGAACTCTTTAATGTTGATGTTTTTCTGAACTCTAAGCatacctttatctgtttttgtattatacatatagtagtatatggtagtatatatTCTTGAATTTATAGTGAAGtgtattgttaaatatataataaaataaattgtgatGTGTGGTAATAGATGGTATGTGTATTATTGatagtaatatattaaaatatatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300181 False 301 lncRNA 0.47 2 33371824 33374300
XR_002651980.1 True 802 lncRNA 0.40 2 33371506 33374468

Neighbor

gene id symbol gene type direction distance location
acoxl acoxl coding upstream 160769 33109959 ~ 33210737 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding upstream 397938 32946416 ~ 32973568 (+)
LOC111196032 NA coding upstream 449928 32911781 ~ 32921578 (+)
itga9 itga9,LOC107679186,LOC107688464 coding upstream 466043 32779544 ~ 32905463 (+)
golga4 NA coding upstream 594735 32722105 ~ 32776771 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding downstream 80308 33454776 ~ 33458782 (+)
LOC103021397 NA coding downstream 1419615 34794083 ~ 34829457 (+)
l2hgdh l2hgdh coding downstream 1470026 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 1488670 34863138 ~ 34892584 (+)
cdkn3 cdkn3 coding downstream 1551816 34926284 ~ 34932635 (+)
G221217 NA non-coding upstream 58903 33290534 ~ 33312603 (+)
G221216 NA non-coding upstream 81633 33287419 ~ 33289873 (+)
G221198 NA non-coding upstream 121136 33246592 ~ 33250370 (+)
G221168 NA non-coding upstream 213466 33145915 ~ 33158040 (+)
G221298 NA non-coding downstream 88716 33463184 ~ 33463392 (+)
G221308 NA non-coding downstream 118441 33492909 ~ 33494218 (+)
G221315 NA non-coding downstream 141184 33515652 ~ 33516194 (+)
G221321 NA non-coding downstream 254978 33629446 ~ 33629680 (+)
G221324 NA non-coding downstream 257618 33632086 ~ 33636648 (+)
bcl2l11 bcl2l11 other upstream 138715 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 694221 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 792954 32502774 ~ 32578552 (+)
map10 NA other upstream 1082656 32284577 ~ 32288850 (+)
G220800 NA other upstream 1633310 31736897 ~ 31738196 (+)
G221292 NA other downstream 69649 33444117 ~ 33444721 (+)
G221390 ate1 other downstream 788113 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 1612531 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 1643974 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 1833963 35208431 ~ 35218378 (+)

Expression


Co-expression Network