G221308


Basic Information

Item Value
gene id G221308
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33492909 ~ 33494218 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300231
CTTTTGGATAAATTATTATGTATGAtctttgcaatatattgaaGCACATTTGATTTGAACAGGAAAATATGCTCACCTCATAAAACTCTTCAAAGCGACTTGGAGTAGGCGTTGCTTGAGTGCCATCTGTGTGGGTCAGAGCCTTCTTTGTGTGCTTTTGAACAGGGGTTGAGGAGGCAACAGTTTGCAGGCAGGAAAACACCACCCTGCTTAAGCAAAAGTCTCTGGATAAAGACCCAACAGACCTCCCAGATTCCCTTAGCATCCTTTCTGCTTTTTTGCACCTCTGAAGAGCCCTTGCATCTTGGCAGATGATTTTGCGCCATGTCCTGCTCACCTTTCTGCAGCTAATCAGGTCACAATCCCCAAGCAGGCCGAGAATCCTGGTGAGGATATGCTTCATGTCTTTCTTCATGAGGCCACAGAGAATGTCCACGTGATCCAGCCCCATCTTTCCTCCAATAACGTTATGGAGGCTGTAGTTTTCAGCAACCTTATTAATGACAGTCCAATCATAGCTCTGACTTTTTCTAAAGCTTTCTGCCAGAGCATTACACACCTCCTCCTGGAACTTGAGTACAGGAAGGCAGGAGGAACGAGAGTCAGAATGGGTGTCCGAggacactgtagagtctcttaGCTCTAGGGACCTTTCTGTAGATGTTTCTGAATCTACATGTTCTAGCTGGCTGTTGTGGAGGGAGAGGTATCCGCTGTCCTCTGCCAAACTGGAACTGCTCAGAGCCACCTCGTCATCAGACTGTAGGCCTGAGGAAAACAGTGTTTCCCTGCAGTTCTCCTTATTGTGAGAGCCTCTCAGATTGTCGTCTGTGTGGCAGGAGACAACGGGCACAGCTGGCTCTAGGCTAGCAGCACTGTCTTCTTGTGGTACCGTCTGACCCTTTAGCTCCACTGGAACAGTCACTTTTTCCTTCTCTGTGAAGAGAGAGCGAGCTGAACCTCTTGTCCGAGCAAGGCACTTCATGATTGTGGATTCTTTGGTCCAGAAAAACTAGAAAACAATGAATAATAGGAGAAAAATTAGGGGGGTGCCTTCTAAATGAGAGTTAGAGACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300231 True 1076 lncRNA 0.47 3 33492909 33494218

Neighbor

gene id symbol gene type direction distance location
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding upstream 34127 33454776 ~ 33458782 (+)
acoxl acoxl coding upstream 282172 33109959 ~ 33210737 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding upstream 519341 32946416 ~ 32973568 (+)
LOC111196032 NA coding upstream 571331 32911781 ~ 32921578 (+)
itga9 itga9,LOC107679186,LOC107688464 coding upstream 587446 32779544 ~ 32905463 (+)
LOC103021397 NA coding downstream 1299865 34794083 ~ 34829457 (+)
l2hgdh l2hgdh coding downstream 1350276 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 1368920 34863138 ~ 34892584 (+)
cdkn3 cdkn3 coding downstream 1432066 34926284 ~ 34932635 (+)
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding downstream 1475006 34969224 ~ 34979881 (+)
G221298 NA non-coding upstream 29517 33463184 ~ 33463392 (+)
G221259 NA non-coding upstream 69710 33352741 ~ 33423199 (+)
LOC111196033 NA non-coding upstream 118441 33371506 ~ 33374468 (+)
G221217 NA non-coding upstream 180306 33290534 ~ 33312603 (+)
G221216 NA non-coding upstream 203036 33287419 ~ 33289873 (+)
G221315 NA non-coding downstream 21434 33515652 ~ 33516194 (+)
G221321 NA non-coding downstream 135228 33629446 ~ 33629680 (+)
G221324 NA non-coding downstream 137868 33632086 ~ 33636648 (+)
G221354 NA non-coding downstream 335661 33829879 ~ 33830186 (+)
G221351 NA non-coding downstream 336279 33830497 ~ 33832294 (+)
G221292 NA other upstream 48188 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 260118 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 815624 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 914357 32502774 ~ 32578552 (+)
map10 NA other upstream 1204059 32284577 ~ 32288850 (+)
G221390 ate1 other downstream 668363 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 1492781 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 1524224 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 1714213 35208431 ~ 35218378 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 2375800 35870018 ~ 35888815 (+)

Expression


Co-expression Network