G221354


Basic Information

Item Value
gene id G221354
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 33829879 ~ 33830186 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300289
tttttacaacaaaacttatcacaaagcagctttacagagaaaaataggtccacgcctcttatgagcagcaccccggagatgccaattattgtggtgacacagtggcaagaacagaggtagagctggtatacagtgaatagccctatttgagtaatgttttaatccatattcggcaaaaactactcaactaagtaattaaaaaatcaaTCTAAAaacaagtgcagtcgcaaagaccttaaaaatgttatgatgaaactggcactcatcaggaccactctaggaaaggaagagcaagagttatttctgtt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300289 True 308 lncRNA 0.38 1 33829879 33830186

Neighbor

gene id symbol gene type direction distance location
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding upstream 371097 33454776 ~ 33458782 (+)
acoxl acoxl coding upstream 619142 33109959 ~ 33210737 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding upstream 856311 32946416 ~ 32973568 (+)
LOC111196032 NA coding upstream 908301 32911781 ~ 32921578 (+)
itga9 itga9,LOC107679186,LOC107688464 coding upstream 924416 32779544 ~ 32905463 (+)
LOC103021397 NA coding downstream 963897 34794083 ~ 34829457 (+)
l2hgdh l2hgdh coding downstream 1014308 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 1032952 34863138 ~ 34892584 (+)
cdkn3 cdkn3 coding downstream 1096098 34926284 ~ 34932635 (+)
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding downstream 1139038 34969224 ~ 34979881 (+)
G221324 NA non-coding upstream 193231 33632086 ~ 33636648 (+)
G221321 NA non-coding upstream 200199 33629446 ~ 33629680 (+)
G221315 NA non-coding upstream 313685 33515652 ~ 33516194 (+)
G221308 NA non-coding upstream 335661 33492909 ~ 33494218 (+)
G221298 NA non-coding upstream 366487 33463184 ~ 33463392 (+)
G221351 NA non-coding downstream 311 33830497 ~ 33832294 (+)
G221361 fgfr2 non-coding downstream 24308 33854494 ~ 33857534 (+)
G221369 NA non-coding downstream 112041 33942227 ~ 33942551 (+)
G221377 NA non-coding downstream 183329 34013515 ~ 34017143 (+)
G221419 NA non-coding downstream 999907 34830093 ~ 34835860 (+)
G221292 NA other upstream 385158 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 597088 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 1152594 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 1251327 32502774 ~ 32578552 (+)
map10 NA other upstream 1541029 32284577 ~ 32288850 (+)
G221390 ate1 other downstream 332395 34162581 ~ 34183237 (+)
synj2bp synj2bp,LOC108411060 other downstream 1156813 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 1188256 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 1378245 35208431 ~ 35218378 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 2039832 35870018 ~ 35888815 (+)

Expression


Co-expression Network