G221420


Basic Information

Item Value
gene id G221420
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 34904778 ~ 34905637 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300393
CATCACCCTGCAGGCACGTAACAGTATTAGACGTCATCCTGACGTAAAATTTTTGTCATCTGAtgtcatgaccaacattcaacttgtaatgaacgtctattgatgttggtggccagctgggcaCGGACCTCTCTGTAAGGGGCGTCCCAGATGGGGCGGAAGGCACCGGTTGGAACCCTGCGCAGAGTTTTTGTGCGGCTCAGTGTTCCCGATCCTCCTACAGGAACCTCAGGAGGAAGTGGGGCTGCTCGGGGGATCTGCCACCTCATGCACACACTGCCTTCCCTCTGAGAGTTCGGCGTGGAACCAGAGGGGTGTGAGTGAGAGCAAGACGGCTTCAAGAGAACAGGAATCTCACTGtcttcttcatcatcctcatcctcacggCTCTCTCCCCTCAGCTCCAGCGTGTCGTCAGGGCTGCAGGTAGTCACAGACGAGTAGTCGAACACAGAAGCATCACCTAGATCAGCATCCGTGTCTCCCTCATCAATCCGCTGAGGCAGAGAGTAAAGGTCAGAGCGGCACACGCGTCCGTCCGGCCCCGGGGACCCACACAACCGCTCCACCAGCCTAGACGGGGACTTCAGACTCTGGGCGGCTGTACCTGGGAGGTCCCCGAACATGGAAGGAGCACATgggttcaggagcagctgctgggGTTGACGCACGGTGGGCATAAAGAGGGGCATGAGAGGGCACTCCCCGGCTCTGCAGTCCCAGCTGCAGCCCTCCGGCCAACTGCTAGAGGGCAGCTGATCACACACACGTTCACGAGAGTtactaaagagagagaagagagatattTACGATTATTTACTGCTAACATTATATCAGTACAACAAATGACTGAAAACCAC

Function

NR:

description
PREDICTED: ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300393 True 860 lncRNA 0.55 1 34904778 34905637

Neighbor

gene id symbol gene type direction distance location
sos2 sos2,LOC107654947 coding upstream 12194 34863138 ~ 34892584 (+)
l2hgdh l2hgdh coding upstream 46295 34844494 ~ 34858483 (+)
LOC103021397 NA coding upstream 75321 34794083 ~ 34829457 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding upstream 1445996 33454776 ~ 33458782 (+)
acoxl acoxl coding upstream 1694041 33109959 ~ 33210737 (+)
cdkn3 cdkn3 coding downstream 20647 34926284 ~ 34932635 (+)
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding downstream 63587 34969224 ~ 34979881 (+)
LOC103035102 LOC103035102,LOC108411051,LOC794838,LOC107705434,LOC107654921,LOC107553207,LOC105890990,LOC107602927 coding downstream 96568 35002205 ~ 35014129 (+)
pacs2 pacs2 coding downstream 130995 35036632 ~ 35108241 (+)
dcaf5 dcaf5,LOC107681972,LOC107553205,LOC107739884,LOC107654956,LOC107705431,LOC102780996 coding downstream 210011 35115648 ~ 35133993 (+)
G221438 NA non-coding upstream 6462 34895461 ~ 34898316 (+)
G221422 NA non-coding upstream 67426 34836961 ~ 34837352 (+)
G221419 NA non-coding upstream 68918 34830093 ~ 34835860 (+)
G221377 NA non-coding upstream 887635 34013515 ~ 34017143 (+)
G221369 NA non-coding upstream 962227 33942227 ~ 33942551 (+)
G221441 LOC108411061 non-coding downstream 1136 34906773 ~ 34907405 (+)
G221445 NA non-coding downstream 12934 34918571 ~ 34918853 (+)
G221446 NA non-coding downstream 15700 34921337 ~ 34921649 (+)
G221437 NA non-coding downstream 27343 34932980 ~ 34933285 (+)
G221436 gmfb,LOC107705437 non-coding downstream 52258 34957895 ~ 34966227 (+)
G221390 ate1 other upstream 721541 34162581 ~ 34183237 (+)
G221292 NA other upstream 1460057 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 1671987 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 2227493 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 2326226 32502774 ~ 32578552 (+)
synj2bp synj2bp,LOC108411060 other downstream 81362 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 112805 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 302794 35208431 ~ 35218378 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 964381 35870018 ~ 35888815 (+)
G221728 fbxo9 other downstream 1064352 35969989 ~ 35972354 (+)

Expression


Co-expression Network