G221422


Basic Information

Item Value
gene id G221422
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 34836961 ~ 34837352 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300395
caatccatcgcagggcagacagacacagacagacacacagacacattcactcacacactcacacctagggggcaattttgtatccgacatccaattagcctgaacgtgccgtctttggactgtgggaggaaaccggagcacccggaggaaacccacgcagacacggggagaacgtgcaaactccacacagaaagacccgggtcgccccagctgggaatcgaacccaggcagtcttgctgtgaggcggaagtgctacccactgcgccaccgtgccgcccttATATTTGTAGGTTAGCCTAATAATTTACCAgcagactaaactaaacaaaaccaaCATTACTTATGATTCCAGAGGAGGTCACTAATTGCAGGAACAGTAGGTGTAGGAAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300395 True 392 lncRNA 0.52 1 34836961 34837352

Neighbor

gene id symbol gene type direction distance location
LOC103021397 NA coding upstream 7504 34794083 ~ 34829457 (+)
LOC103021727 vip,LOC107585469,LOC108262931,LOC107655780 coding upstream 1378179 33454776 ~ 33458782 (+)
acoxl acoxl coding upstream 1626224 33109959 ~ 33210737 (+)
fbln7 fbln7,LOC107679196,LOC107754577,LOC107688955,LOC107733340,LOC107585467 coding upstream 1863393 32946416 ~ 32973568 (+)
LOC111196032 NA coding upstream 1915383 32911781 ~ 32921578 (+)
l2hgdh l2hgdh coding downstream 7142 34844494 ~ 34858483 (+)
sos2 sos2,LOC107654947 coding downstream 25786 34863138 ~ 34892584 (+)
cdkn3 cdkn3 coding downstream 88932 34926284 ~ 34932635 (+)
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding downstream 131872 34969224 ~ 34979881 (+)
LOC103035102 LOC103035102,LOC108411051,LOC794838,LOC107705434,LOC107654921,LOC107553207,LOC105890990,LOC107602927 coding downstream 164853 35002205 ~ 35014129 (+)
G221419 NA non-coding upstream 1101 34830093 ~ 34835860 (+)
G221377 NA non-coding upstream 819818 34013515 ~ 34017143 (+)
G221369 NA non-coding upstream 894410 33942227 ~ 33942551 (+)
G221361 fgfr2 non-coding upstream 979427 33854494 ~ 33857534 (+)
G221351 NA non-coding upstream 1004667 33830497 ~ 33832294 (+)
G221438 NA non-coding downstream 58109 34895461 ~ 34898316 (+)
G221420 NA non-coding downstream 67426 34904778 ~ 34905637 (+)
G221441 LOC108411061 non-coding downstream 69421 34906773 ~ 34907405 (+)
G221445 NA non-coding downstream 81219 34918571 ~ 34918853 (+)
G221446 NA non-coding downstream 83985 34921337 ~ 34921649 (+)
G221390 ate1 other upstream 653724 34162581 ~ 34183237 (+)
G221292 NA other upstream 1392240 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 1604170 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 2159676 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 2258409 32502774 ~ 32578552 (+)
synj2bp synj2bp,LOC108411060 other downstream 149647 34986999 ~ 34997044 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 181090 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 371079 35208431 ~ 35218378 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 1032666 35870018 ~ 35888815 (+)
G221728 fbxo9 other downstream 1132637 35969989 ~ 35972354 (+)

Expression


Co-expression Network