synj2bp (synj2bp,LOC108411060)


Basic Information

Item Value
gene id synj2bp
gene name synj2bp,LOC108411060
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 34986999 ~ 34997044 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300434
cacttcaGAAGGAGGCGCTGCACGAGTTCACCTTCAGCCCTTAAATCAAATCTTATGAAACTTTACTGAAGCTTTTGGAGGATTAAAACATCATGAACGGCTCTGCTCTCAGGACCGCGGCGGTGCTGGACATCCAGCTCAGGCGGGGACCAGCGGgTTTGGGGTTTAATATAGTGGGCGGAGTCGATCAGCAGTACTTGCTGGAAGACAGCAGTATCTATGTGGCCAAGATCAAAGAGAACGGAGCGGCAGCACTGGATGGGCGACTGCAGGAGGGCGACAAAATACTAGCGattaATGGACATAAACTGGAAAATCTGACCCACGGCGCTGCGGTGGAACTGTTTCGGTCAGCAGGAGAGGACGTCCAACTACAAGTTCAAAAGAGACTCCCAACCACCTCAAACGGTCCTGCAAATCCTCGCCCTGATCGAGATTCATCCCAGGCTGTCGGAGCTGTGACGATTGCCATTATGGTTGCAGTAGCTGCAATTGGGTTCATTATCTACAAACGATACCCCAGACGACCATTTTAGCCCTTTTCCAGTTGTACATATTTTAAAGACAAACCttatgaactgttttttttttttttttgctgagggCCAAAAAAAGGAATTGCAGTGACAAGATTAATGGAAACAGAGCTACAGGTTAGCTAAATGTTTGCCTTCaacttaaaattaatacaattattacagttgtaGCTACATTCTGAGCTGTAATCATATATGCATAACCAAAACTCAAAATCTGTTGTGTTGTATAAAGCTCAGTGGAGTTAGAGATTATGTTGAATAAGAGATCTTGAATAGAGGGAAGCTGCTGAGAACGAAACCTGCTGAGTGACCAAAGAAAGAAGTGCTGTTCCTCCGAAACTGTAGAGGGCGCTGCAAAACCTTCCAACTTGAAGCTGGTTCTTTTTCTCCTGACCGGACACTGTCAGGAGACACTTGGGATGTAAACACAACATAGAGTGGCTGGTAGATGAACGACGGTCAGCTTTTTGAAAAGTTTTGCTAATGCCATTATGCAAAATGAAGCATGTGGTTTTGGCCCTTTACAAACCGGGAAGAccctgtgcatgtgtgtgtttgtgtatgtgtatgtaagtTCCTCTTGCTCACTGGTTGTTGCATAGGCACACGTGTGTGCACTAAATATGGATGTTGGTCCTTGTGTAGTGGTCTTGGCAGGAaggaagtgtttgtgtgtgttgttttttgacGATTTTGTCCAGTTTTAGGAATTCACCATTCTCCTCTTACAATCAGGTACTTAGTTAAGGGGGGAGGCGTTctctaaatgtttaaattgaCACTCTAGCACGCTAGCATTCAATCAAATCTGCaaatctttaaaatgtttttgtttggaaGGGTGATCTTTATATGGGAAGTAAGGATACACAGCCTAAAAAGGAACGATTGCAtaggtctcttttttttttctttaacaggCCTCTGAAGTGGTCAGTCATATTGTGGTTAGCATGGTAGCATGTAGTTAGCAGCGGGAGCTCATTGTTTCACTCTacgctattttttttttatgaatgctGTGGTAAACGAACATGGTACATTTACCGTAGTCATGAATATACGCTTCATCAGGGGTCACCAATCTTATCTGTAAGGGGCAGAAGTTACTGCAGGTTTTAAGTCCAACCAAGCTGAAGCACACCCTGTATAGTTAACCATATGTTATAAAGGCTGAGACTGACCGAACAAGTAGAATcaggtgtgcttttgctttactggaataaaaaaaactccaccCACACCATTTTGGATAAGATTGTTGATACTTGCACTGTTTTATCAAAAGTGTCCGCTCCCCTGCATTGtgttctactgttcttgagctgatCTGAATCTACATTAAGCTTGGAGGTCTGTAGAGATTGACAGGCACTGATGGTTCACTCTGGagtatttagtagtgaggaaatttgaTGACTGGATGTAGTAAACAGGTGGCGTTCTATCACAGAACCACACTGGAATTCACTGTTCTCCTAAGAGTGACTCAttctttcacattttttgtagaagcagtctgcatgatcaggtgcttggttttatacacctgtggccaagTTCAATGATCTGGATGGCTGAGTGGATACTTTTGgtaaataatgtgtatttttccTCCTCAATCTTTCTGGATACTTATAGAATTAAATTAATACTACAAGAAATCACAGTATTTCTCATCACCAAGGTGATTTCCTAAAACTGACCCTCACTGAAAGTAACCCAAACAAATTGGCTATTTTTTTGTCGAAGATGTAAGTGTGTCTGTAAGTTTTAGCTGCACAAATTTAACATCTTACAATATctttattaaacatgaaagGATGGATTGTAGCTCTCTCACCTCCAAATCACCCAGTGGGCCAGTTTACCTGTGTTTTACTGCAAGATTGGGCTTCTGTCATAAATGTATACCATCATGTAGTTCTCTGTAACCAGCAGCAAGTATGGGACAATGTTTGGCTCCAATTtgggttggtttagtttagtagCAGAATTAGTGACATAATTTTCACTCTTTGATGAGCTCCTAGATCAAACGACAATTTTGGAACATATTTGTTTACCACAGGTTTAGATAGCAGATTGTTCAGTTTTTTCTTCATGCAGAAGAATGACTTGGGGCGTTTTCACAATGGAACGTTCAGTCAAggtttgcatgtttgtcataCTGTATACTGCACATTTGTTTGTAGTCTTATTATACTTCACACTGATAGGTTTGTAGATTGTTGCGAGTTCGGCGAGTTGCTTTTTTCAGGTGTTGTGCTAAATGCTAGCTCTCTAGAATCTGTTagaatctgactccccttgGCAGCAGAAtgagttaaatatatatgtctgtttatACATTACTAGGGTTAATCTAcaattacagtagatacaagaATCAACAGTGTAAGCGTTTACATTCATATAATTTATGTGATGCACCTGCGTGTCAACGGGAGTCGGACTTAAGCACAACAtcgcttctttttcttctgttatGTTTAAGGATGATGGTAGCATgcctcagcttcctgtaatctCAAAGTCCGAACTATCTAGAAAAGTGCACTTTTAACACTGCAGGTGATTCAGACCATTGTTAGGAGATTCAAACCAAGACCAGCTCTTGTGGTCCAACCAAACTCTGGTCTTTTGGTCCAGACTGTGGCTCACGGCCCAAACAAGGCACTCACGAGTTTATAGTTATAGTACACATCAGAATGACCTACGGCTCCAGAGgtctgttattatattattagcaGTTGTTTTTCTGGAGCTGATCTGTTTTACTCAGGGCTGCCCTCTTTCCCGGGCCAATCTTGCAGCTAATCGTGAAGGTGGCATGTAAGGCCCAGTGCTCCAGTATCTGTGTTTAattttcagtgtaattaatTTCTAGTGTAATTAATTAagtgtttatgtgtatgtacaTGTGTTCTGGAGGTTCTGCCGTTTGGCCAAATGGAAGAACCTGCTTTGAAAGCCTTACAGCATGAATGAAATGCATTTATTTCTGTCCTGTCACTACCAAGCTAATGTAGAATTCGCACGAGCATCACCCTTCGAATAAACCATTTCTTACAAAAGTCGTGTGCCGTAAACTTTCCATGTGGGGTTTAATTCAGTGTTGGACAGCACTGATGCTCATGAAACCTTGCATGTGACTgtttgtgtacgtgtgtgtgtttgtgtaagtatGTATTGACATGATTCCTCACACCCACGCAAAGTAAATGCACCCTTTTCCCCtcactggacaaaaaaaaaaaagcacttcgAATGCAGGGCACAGTGTCACCAAGACTGAGTTTTCAAGTCTGGATCACAAGTGAAAGTTTGAAGAATTAATTTGattgtgaaagtgttaaatgtgacaattgtaaataaatgctaatgTCGGAGGCCTTGATGTGAGAGTG
>XM_007247587.3
TTGTCCGCTAGAGGTcgaacctccagcagcacttcaGAAGGAGGCGCTGCACGAGTTCACCTTCAGCCCTTAAATCAAATCTTATGAAACTTTACTGAAGCTTTTGGAGGATTAAAACATCATGAACGGCTCTGCTCTCAGGACCGCGGCGGTGCTGGACATCCAGCTCAGGCGGGGACCAGCGGgTTTGGGGTTTAATATAGTGGGCGGAGTCGATCAGCAGTACTTGCTGGAAGACAGCAGTATCTATGTGGCCAAGATCAAAGAGAACGGAGCGGCAGCACTGGATGGGCGACTGCAGGAGGGCGACAAAATACTAGCGattaATGGACATAAACTGGAAAATCTGACCCACGGCGCTGCGGTGGAACTGTTTCGGTCAGCAGGAGAGGACGTCCAACTACAAGTTCAAAAGAGACTCCCAACCACCTCAAACGGTCCTGCAAATCCTCGCCCTGATCGAGATTCATCCCAGGCTGTCGGAGCTGTGACGATTGCCATTATGGTTGCAGTAGCTGCAATTGGGTTCATTATCTACAAACGATACCCCAGACGACCATTTTAGCCCTTTTCCAGTTGTACATATTTTAAAGACAAACCttatgaactgttttttttttttttttgctgagggCCAAAAAAAGGAATTGCAGTGACAAGATTAATGGAAACAGAGCTACAGGTTAGCTAAATGTTTGCCTTCaacttaaaattaatacaattattacagttgtaGCTACATTCTGAGCTGTAATCATATATGCATAACCAAAACTCAAAATCTGTTGTGTTGTATAAAGCTCAGTGGAGTTAGAGATTATGTTGAATAAGAGATCTTGAATAGAGGGAAGCTGCTGAGAACGAAACCTGCTGAGTGACCAAAGAAAGAAGTGCTGTTCCTCCGAAACTGTAGAGGGCGCTGCAAAACCTTCCAACTTGAAGCTGGTTCTTTTTCTCCTGACCGGACACTGTCAGGAGACACTTGGGATGTAAACACAACATAGAGTGGCTGGTAGATGAACGACGGTCAGCTTTTTGAAAAGTTTTGCTAATGCCATTATGCAAAATGAAGCATGTGGTTTTGGCCCTTTACAAACCGGGAAGAccctgtgcatgtgtgtgtttgtgtatgtgtatgtaagtTCCTCTTGCTCACTGGTTGTTGCATAGGCACACGTGTGTGCACTAAATATGGATGTTGGTCCTTGTGTAGTGGTCTTGGCAGGAaggaagtgtttgtgtgtgttgttttttgacGATTTTGTCCAGTTTTAGGAATTCACCATTCTCCTCTTACAATCAGGTACTTAGTTAAGGGGGGAGGCGTTctctaaatgtttaaattgaCACTCTAGCACGCTAGCATTCAATCAAATCTGCaaatctttaaaatgtttttgtttggaaGGGTGATCTTTATATGGGAAGTAAGGATACACAGCCTAAAAAGGAACGATTGCAtaggtctcttttttttttctttaacaggCCTCTGAAGTGGTCAGTCATATTGTGGTTAGCATGGTAGCATGTAGTTAGCAGCGGGAGCTCATTGTTTCACTCTacgctattttttttttatgaatgctGTGGTAAACGAACATGGTACATTTACCGTAGTCATGAATATACGCTTCATCAGGGGTCACCAATCTTATCTGTAAGGGGCAGAAGTTACTGCAGGTTTTAAGTCCAACCAAGCTGAAGCACACCCTGTATAGTTAACCATATGTTATAAAGGCTGAGACTGACCGAACAAGTAGAATcaggtgtgcttttgctttactggaataaaaaaaactccaccCACACCATTTTGGATAAGATTGTTGATACTTGCACTGTTTTATCAAAAGTGTCCGCTCCCCTGCATTGtgttctactgttcttgagctgatCTGAATCTACATTAAGCTTGGAGGTCTGTAGAGATTGACAGGCACTGATGGTTCACTCTGGagtatttagtagtgaggaaatttgaTGACTGGATGTAGTAAACAGGTGGCGTTCTATCACAGAACCACACTGGAATTCACTGTTCTCCTAAGAGTGACTCAttctttcacattttttgtagaagcagtctgcatgatcaggtgcttggttttatacacctgtggccaagTTCAATGATCTGGATGGCTGAGTGGATACTTTTGgtaaataatgtgtatttttccTCCTCAATCTTTCTGGATACTTATAGAATTAAATTAATACTACAAGAAATCACAGTATTTCTCATCACCAAGGTGATTTCCTAAAACTGACCCTCACTGAAAGTAACCCAAACAAATTGGCTATTTTTTTGTCGAAGATGTAAGTGTGTCTGTAAGTTTTAGCTGCACAAATTTAACATCTTACAATATctttattaaacatgaaagGATGGATTGTAGCTCTCTCACCTCCAAATCACCCAGTGGGCCAGTTTACCTGTGTTTTACTGCAAGATTGGGCTTCTGTCATAAATGTATACCATCATGTAGTTCTCTGTAACCAGCAGCAAGTATGGGACAATGTTTGGCTCCAATTtgggttggtttagtttagtagCAGAATTAGTGACATAATTTTCACTCTTTGATGAGCTCCTAGATCAAACGACAATTTTGGAACATATTTGTTTACCACAGGTTTAGATAGCAGATTGTTCAGTTTTTTCTTCATGCAGAAGAATGACTTGGGGCGTTTTCACAATGGAACGTTCAGTCAAggtttgcatgtttgtcataCTGTATACTGCACATTTGTTTGTAGTCTTATTATACTTCACACTGATAGGTTTGTAGATTGTTGCGAGTTCGGCGAGTTGCTTTTTTCAGGTGTTGTGCTAAATGCTAGCTCTCTAGAATCTGTTagaatctgactccccttgGCAGCAGAAtgagttaaatatatatgtctgtttatACATTACTAGGGTTAATCTAcaattacagtagatacaagaATCAACAGTGTAAGCGTTTACATTCATATAATTTATGTGATGCACCTGCGTGTCAACGGGAGTCGGACTTAAGCACAACAtcgcttctttttcttctgttatGTTTAAGGATGATGGTAGCATgcctcagcttcctgtaatctCAAAGTCCGAACTATCTAGAAAAGTGCACTTTTAACACTGCAGGTGATTCAGACCATTGTTAGGAGATTCAAACCAAGACCAGCTCTTGTGGTCCAACCAAACTCTGGTCTTTTGGTCCAGACTGTGGCTCACGGCCCAAACAAGGCACTCACGAGTTTATAGTTATAGTACACATCAGAATGACCTACGGCTCCAGAGgtctgttattatattattagcaGTTGTTTTTCTGGAGCTGATCTGTTTTACTCAGGGCTGCCCTCTTTCCCGGGCCAATCTTGCAGCTAATCGTGAAGGTGGCATGTAAGGCCCAGTGCTCCAGTATCTGTGTTTAattttcagtgtaattaatTTCTAGTGTAATTAATTAagtgtttatgtgtatgtacaTGTGTTCTGGAGGTTCTGCCGTTTGGCCAAATGGAAGAACCTGCTTTGAAAGCCTTACAGCATGAATGAAATGCATTTATTTCTGTCCTGTCACTACCAAGCTAATGTAGAATTCGCACGAGCATCACCCTTCGAATAAACCATTTCTTACAAAA

Function

symbol description
synj2bp Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein).

NR:

description
synaptojanin-2-binding protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300434 True 3949 TUCP 0.41 4 34987028 34997044
XM_007247587.3 False 3645 mRNA 0.41 4 34986999 34996711

Neighbor

gene id symbol gene type direction distance location
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding upstream 7118 34969224 ~ 34979881 (+)
cdkn3 cdkn3 coding upstream 54364 34926284 ~ 34932635 (+)
sos2 sos2,LOC107654947 coding upstream 94415 34863138 ~ 34892584 (+)
l2hgdh l2hgdh coding upstream 128516 34844494 ~ 34858483 (+)
LOC103021397 NA coding upstream 157542 34794083 ~ 34829457 (+)
LOC103035102 LOC103035102,LOC108411051,LOC794838,LOC107705434,LOC107654921,LOC107553207,LOC105890990,LOC107602927 coding downstream 5161 35002205 ~ 35014129 (+)
pacs2 pacs2 coding downstream 39588 35036632 ~ 35108241 (+)
dcaf5 dcaf5,LOC107681972,LOC107553205,LOC107739884,LOC107654956,LOC107705431,LOC102780996 coding downstream 118604 35115648 ~ 35133993 (+)
actn1 actn1,LOC108440922,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC103359947,LOC108261236,LOC107680897 coding downstream 155286 35152330 ~ 35208826 (+)
slc8a3 slc8a3,LOC107654959,LOC107602954,LOC107705428,LOC107091425 coding downstream 237399 35234443 ~ 35308911 (+)
G221447 NA non-coding upstream 4638 34980019 ~ 34982361 (+)
G221436 gmfb,LOC107705437 non-coding upstream 20772 34957895 ~ 34966227 (+)
G221437 NA non-coding upstream 53714 34932980 ~ 34933285 (+)
G221446 NA non-coding upstream 65350 34921337 ~ 34921649 (+)
G221445 NA non-coding upstream 68146 34918571 ~ 34918853 (+)
G221517 NA non-coding downstream 56414 35053458 ~ 35054559 (+)
LOC111196036 NA non-coding downstream 138835 35135879 ~ 35144922 (+)
G221522 NA non-coding downstream 202606 35199650 ~ 35243951 (+)
G221527 NA non-coding downstream 312458 35309502 ~ 35315890 (+)
G221545 NA non-coding downstream 394640 35391684 ~ 35432694 (+)
G221390 ate1 other upstream 803762 34162581 ~ 34183237 (+)
G221292 NA other upstream 1542278 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 1754208 33213628 ~ 33232791 (+)
LOC103038412 LOC108430255,LOC107679129,LOC107585442,LOC107688640 other upstream 2309714 32613474 ~ 32677285 (+)
LOC103027057 fbxo11a,msh6,LOC108413220,LOC107725019,LOC107588452,LOC107679165,LOC107733352,LOC108430631 other upstream 2408447 32502774 ~ 32578552 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other downstream 21398 35018442 ~ 35025598 (+)
LOC103031497 NA other downstream 211387 35208431 ~ 35218378 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 872974 35870018 ~ 35888815 (+)
G221728 fbxo9 other downstream 972945 35969989 ~ 35972354 (+)
G221737 NA other downstream 1055472 36052516 ~ 36056690 (+)

Expression


Co-expression Network