LOC103031497


Basic Information

Item Value
gene id LOC103031497
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35208431 ~ 35218378 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300526
TTGTAATTGGTGTGCAAAAGAATCTGCATAAGAATCTGAATCACTTTAACAAGACCTAACTGTAAGCAAATTCCAAATCTTTGCCTAAATGCAAGTATGGTGAATATGGTtgtattgtcttgtcttgtttgatTGTAGTTGCTGATTGTGGGCGGTTCTTTCGGACTCAGAGAGTTTACACAGCTTCGATACGATGATCAAAAGCTCAAGAcaaagCTGGTTCCTGAGCTGGCGGCCCGAGTGAACATTGAGAAACAGTCTGTCATTCTGGAGGAGGAGTATGAGAAGATGAAGAAGGTGGATCTGGACAACTGGAAGAACATCCGGGGGCCGAGGCCGTGGGAAAACTCCAAAGAGTTTCAGGATCAGCAGCGAGAACAGATCAGTAAACGGCAGCGAGGAGACTGACCAC
>XM_022684766.1
ATGCTCGATCCGTTTTTTGTACGCTCCTCTTTACCCCTCTCTCTGCtgcctTTGCTGATTGTGGGCGGTTCTTTCGGACTCAGAGAGTTTACACAGCTTCGATACGATGATCAAAAGCTCAAGAcaaagCTGGTTCCTGAGCTGGCGGCCCGAGTGAACATTGAGAAACAGTCTGTCATTCTGGAGGAGGAGTATGAGAAGATGAAGAAGGTGGATCTGGACAACTGGAAGAACATCCGGGGGCCGAGGCCGTGGGAAAACTCCAAAGAGTTTCAGGATCAGCAGCGAGAACAGATCAGTAAACGGCAGCGAGGAGACTGACCACCCGAAACACCCGCTCATCCTGTTTGTGTATATTCTGAACtatattctgtgtgtgtgtgtgtgtgtttctccttAGCTGCTCCTGAACACCCAGTGTGATAACTGtttcgagttttttttttttatgtgaataaacgtaaaatataatataa

Function

GO:

id name namespace
GO:0031966 mitochondrial membrane cellular_component

KEGG:

id description
K18182 COX16; cytochrome c oxidase assembly protein subunit 16

RNA

RNA id representative length rna type GC content exon number start site end site
TU300526 False 412 lncRNA 0.45 3 35212969 35218227
XM_022684766.1 True 476 mRNA 0.46 4 35208431 35218378

Neighbor

gene id symbol gene type direction distance location
dcaf5 dcaf5,LOC107681972,LOC107553205,LOC107739884,LOC107654956,LOC107705431,LOC102780996 coding upstream 74438 35115648 ~ 35133993 (+)
pacs2 pacs2 coding upstream 100190 35036632 ~ 35108241 (+)
LOC103035102 LOC103035102,LOC108411051,LOC794838,LOC107705434,LOC107654921,LOC107553207,LOC105890990,LOC107602927 coding upstream 194302 35002205 ~ 35014129 (+)
LOC103035732 LOC103035732,LOC108411054,LOC106924735,LOC102214456,LOC105891002,LOC101468242 coding upstream 228550 34969224 ~ 34979881 (+)
cdkn3 cdkn3 coding upstream 275796 34926284 ~ 34932635 (+)
slc8a3 slc8a3,LOC107654959,LOC107602954,LOC107705428,LOC107091425 coding downstream 16065 35234443 ~ 35308911 (+)
map3k9 map3k9,LOC107705427,LOC107654958,LOC107602953,LOC107553203 coding downstream 106422 35324800 ~ 35348312 (+)
med6 med6,LOC107654960,LOC107602956 coding downstream 158359 35376737 ~ 35381446 (+)
pcnx1 pcnx1,pcnx coding downstream 167325 35385703 ~ 35456493 (+)
LOC103046445 lgmn coding downstream 243980 35462358 ~ 35485086 (+)
LOC111196036 NA non-coding upstream 63509 35135879 ~ 35144922 (+)
G221517 NA non-coding upstream 153872 35053458 ~ 35054559 (+)
G221447 NA non-coding upstream 226070 34980019 ~ 34982361 (+)
G221436 gmfb,LOC107705437 non-coding upstream 242204 34957895 ~ 34966227 (+)
G221437 NA non-coding upstream 275146 34932980 ~ 34933285 (+)
G221527 NA non-coding downstream 91124 35309502 ~ 35315890 (+)
G221545 NA non-coding downstream 173306 35391684 ~ 35432694 (+)
G221540 NA non-coding downstream 224835 35443213 ~ 35459370 (+)
G221551 NA non-coding downstream 338925 35557303 ~ 35727535 (+)
G221559 NA non-coding downstream 342455 35560833 ~ 35566330 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 182833 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 211387 34986999 ~ 34997044 (+)
G221390 ate1 other upstream 1025194 34162581 ~ 34183237 (+)
G221292 NA other upstream 1763710 33444117 ~ 33444721 (+)
bcl2l11 bcl2l11 other upstream 1975640 33213628 ~ 33232791 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other downstream 651640 35870018 ~ 35888815 (+)
G221728 fbxo9 other downstream 751611 35969989 ~ 35972354 (+)
G221737 NA other downstream 834138 36052516 ~ 36056690 (+)
G221878 NA other downstream 1184770 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 1758028 36976406 ~ 36991484 (+)

Expression


Co-expression Network