G221702


Basic Information

Item Value
gene id G221702
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35852260 ~ 36016789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300828
aattactctgactgtaactataacgccgttaccatttccgacaccccattactgcacgttactttagcagctctatgaactttttttttttttaacttcgctttgccctcgTTAACCCCTCCttcggtgaacttgagcttctggccgctgtgcctgtggtttgcagtgttgggagtaacggcgttaaaactaacggcgttactaacgccgttacttttttcagtaatgagtaatctaactaattactctgactgtaactataacgccgttaccatttccgacactccgttactgcacgttactttagcagctctatgaatttttttttttttaacttggctTTGCCCTCGTTAACCCCTCCttcggtgaacttgagcttctggccgctgtgcctgtggtttggcgtggtgaagtgaggcacaattgtgacgatttgcgtgctctaatcaattcagtgattgccgtggataGCCCAAGTTCCGATTAAAAGGACgttaaactctttttagctgctccggtttttgtggtgctgctgctttctcttttagagctcagattctctgcccgaacctgacccgacccgaaatcgggctcctatttttattttatataaagatctggtgtgataatcacaatgttgctaagtaaccaattattattgttcactaaagctaACGAAATagtgaaaactgaaagtgaaaaacatttgtgttaactgaatctaataaaaacggtaattaaaaggaaaaaaaacataactatctcgaactgtattttgtgtttataaaactaactaaaacgaactgaaattactgatagaataccctcattttcgtgtttaatttatttataagcgctgttgtacagcgggcggtgttgtgccgagtgcgctgcacctcgtggtccgttagttcttgtgtaaagcgctcgcgctagccgcaaaatacaacggaaaacactgagaaactgcagaattatgtatgggattacaatatgagtgccaggcagatgaaagagaaacaggagatacagtatgtgagaacatttacctgtgagtagctcacaccaaaacacgcaaatctctttctttctctttttctctctctctctctctcacgtttattagattgatctctctgatgagatgtgtaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300828 True 1152 lncRNA 0.41 3 35852260 36016789

Neighbor

gene id symbol gene type direction distance location
LOC103029802 LOC108440917 coding upstream 296124 35519412 ~ 35556136 (+)
LOC103046445 lgmn coding upstream 367174 35462358 ~ 35485086 (+)
pcnx1 pcnx1,pcnx coding upstream 395767 35385703 ~ 35456493 (+)
med6 med6,LOC107654960,LOC107602956 coding upstream 470814 35376737 ~ 35381446 (+)
map3k9 map3k9,LOC107705427,LOC107654958,LOC107602953,LOC107553203 coding upstream 503948 35324800 ~ 35348312 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding downstream 53468 36070257 ~ 36075234 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 59709 36076498 ~ 36099653 (+)
wdr92 wdr92 coding downstream 86290 36103079 ~ 36108229 (+)
perp perp coding downstream 130173 36146962 ~ 36153785 (+)
LOC103034782 NA coding downstream 305551 36322340 ~ 36356570 (+)
G221682 NA non-coding upstream 91268 35755831 ~ 35760992 (+)
G221671 NA non-coding upstream 122793 35728900 ~ 35729467 (+)
G221551 NA non-coding upstream 124725 35557303 ~ 35727535 (+)
G221563 NA non-coding upstream 228742 35618554 ~ 35623518 (+)
G221559 NA non-coding upstream 285930 35560833 ~ 35566330 (+)
G221736 LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981 non-coding downstream 32248 36049037 ~ 36142824 (+)
G221744 NA non-coding downstream 61452 36078241 ~ 36078636 (+)
G221745 NA non-coding downstream 74189 36090978 ~ 36092132 (+)
G221749 NA non-coding downstream 102178 36118967 ~ 36119305 (+)
G221843 NA non-coding downstream 161668 36178457 ~ 36178912 (+)
LOC103031497 NA other upstream 633882 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 826662 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 855216 34986999 ~ 34997044 (+)
G221390 ate1 other upstream 1669023 34162581 ~ 34183237 (+)
G221292 NA other upstream 2407539 33444117 ~ 33444721 (+)
G221737 NA other downstream 35727 36052516 ~ 36056690 (+)
G221878 NA other downstream 386359 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 959617 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 984296 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2719150 38735939 ~ 38744184 (+)

Expression


Co-expression Network