G221714


Basic Information

Item Value
gene id G221714
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35917689 ~ 35930336 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300841
taaaccattccattgTAGCTCTGGTTGTATGTTTAGAGTCGTTGTCCTAAATCTCCTTTGCAGCCTTCACCATGTTTTATTCTAGGATTGCCTTGTGTTGcgctccatccatcttttcatCATCTCTGACCAACTTCCCTATTCCTGTGTCAGGCCAGCCACTTCCTGTCTGCCTGCCATGGACTGTAATTCAGTTACTCAGTTACTCAGTTCTCACCTGTTCAGCCCTGTATAAATAACCCGTATTTCCTATTTTGAGTCTAGtttctagctcttctacctctcattctctttatcttctctgccttttgtgtatgacctctgCCTGTTTCTTTACTGATTACCGATTTAGCTAAACCTGTGCTTGGTTTTCCTTGTAGTACTGTTACCATCATTAATAAATTCTCTGATGATAATTTGCATGTGTCTCACCTGTGTCTGGCATTCGTGACACCCTGCTGAAGAAACTttgtatttaggccaaaaagttcaatttggTCTTATCTAACCACAGCACTTTCTTCCACATGTTAGCTGCAACAAACAGCACTTTTTATGTCTTTCCTTTAACAGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300841 True 575 lncRNA 0.41 2 35917689 35930336

Neighbor

gene id symbol gene type direction distance location
klhl31 klhl31,LOC107664702 coding upstream 49542 35863866 ~ 35868147 (+)
LOC103029802 LOC108440917 coding upstream 361553 35519412 ~ 35556136 (+)
LOC103046445 lgmn coding upstream 432603 35462358 ~ 35485086 (+)
pcnx1 pcnx1,pcnx coding upstream 461196 35385703 ~ 35456493 (+)
med6 med6,LOC107654960,LOC107602956 coding upstream 536243 35376737 ~ 35381446 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding downstream 47925 35978261 ~ 36063654 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding downstream 139921 36070257 ~ 36075234 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 146162 36076498 ~ 36099653 (+)
wdr92 wdr92 coding downstream 172743 36103079 ~ 36108229 (+)
perp perp coding downstream 216626 36146962 ~ 36153785 (+)
G221682 NA non-coding upstream 156697 35755831 ~ 35760992 (+)
G221671 NA non-coding upstream 188222 35728900 ~ 35729467 (+)
G221551 NA non-coding upstream 190154 35557303 ~ 35727535 (+)
G221715 NA non-coding downstream 11512 35941848 ~ 35946885 (+)
G221716 NA non-coding downstream 12539 35942875 ~ 35945693 (+)
G221701 NA non-coding downstream 18532 35948868 ~ 36014003 (+)
G221730 NA non-coding downstream 44913 35975249 ~ 35977008 (+)
G221736 LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981 non-coding downstream 118701 36049037 ~ 36142824 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 28874 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 699311 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 892091 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 920645 34986999 ~ 34997044 (+)
G221390 ate1 other upstream 1734452 34162581 ~ 34183237 (+)
G221728 fbxo9 other downstream 39653 35969989 ~ 35972354 (+)
G221737 NA other downstream 122180 36052516 ~ 36056690 (+)
G221878 NA other downstream 472812 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 1046070 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 1070749 37001085 ~ 37019302 (+)

Expression


Co-expression Network