G221728 (fbxo9)


Basic Information

Item Value
gene id G221728
gene name fbxo9
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 35969989 ~ 35972354 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300860
tatcctTTATAAATATCCTAAAATAAGTatttcttaatatatttttacttttatatgctttttaaaccaTGCACACAGTCAAAGCTATGGCCTAGTAAACAAATACAATGCAAACTTGAAATACCTATATCTTACACTACGAAACACTTATTTCATCAAATACAAACAACGTACATGTTAACTTATACAAATAAGACATGTACTGTCCATCGGACTTACTAGCTCCCGCCAACTCTATCTGGATCCGGAGATCTGTTGTAGTTGATCTTAAACTCAATGTCAGGCACAAGCTGCATTGCACTCTTATAGTACTTGATGGCTTCATAAACAGCTCCATTTTGCTCCTCTTCTACGGCCTTCAGAAACAGCTCTCGGGCCTTTTCCTCTCTAACCAGATCCTGTCTCTTTTTCAGATCGGCAGCCTTGGACGACCCTTTCCTAGCAGAGCTGGGCAGCAGCTCAGACATCCACTGAGCCCTAAAAGCACTAAGCTCCATCTGCAGATTAGAGTCTTCAGAATTTTCATCTTCACCCTCTTCAACAGACTCAGTACCAGCATTTTGGTTACTTTCTGCCTGTTTgtgaataaatgattaaatataagACCAAAGTAGAAGTGGAGGACAGGCGTGTCTTTTAAGCATCAGGTGTGCAAACACTGACACAGCCTTGTGTAAACACAGTTCAGCAGAGAACAAACCCTGTGCAGATGATTTCAGaagcctgtaaaaaaaaaaatcaaatatacacTTGCATCTTTCCGTATTTGCAATTATTAGGAAGTTCTCTTAAATAGCTAAGCAGAAAGCTTCTAACAGAAATGTTCTGGGGGCTGTTCCACGAAGCGAGC

Function

symbol description
fbxo9 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process; protein ubiquitination; and regulation of TOR signaling. Predicted to be located in cytoplasm. Predicted to be part of SCF ubiquitin ligase complex. Is expressed in several structures, including alar plate midbrain region; immature eye; musculature system; optic tectum; and pronephric duct. Orthologous to human FBXO9 (F-box protein 9).

NR:

description
PREDICTED: F-box only protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300860 True 850 TUCP 0.40 4 35969989 35972354

Neighbor

gene id symbol gene type direction distance location
elovl5 elovl5,LOC107664697,LOC105911564 coding upstream 32304 35900906 ~ 35937685 (+)
klhl31 klhl31,LOC107664702 coding upstream 101842 35863866 ~ 35868147 (+)
LOC103029802 LOC108440917 coding upstream 413853 35519412 ~ 35556136 (+)
LOC103046445 lgmn coding upstream 484903 35462358 ~ 35485086 (+)
pcnx1 pcnx1,pcnx coding upstream 513496 35385703 ~ 35456493 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding downstream 5907 35978261 ~ 36063654 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding downstream 97903 36070257 ~ 36075234 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding downstream 104144 36076498 ~ 36099653 (+)
wdr92 wdr92 coding downstream 130725 36103079 ~ 36108229 (+)
perp perp coding downstream 174608 36146962 ~ 36153785 (+)
G221715 NA non-coding upstream 23104 35941848 ~ 35946885 (+)
G221716 NA non-coding upstream 24296 35942875 ~ 35945693 (+)
G221714 NA non-coding upstream 39653 35917689 ~ 35930336 (+)
G221682 NA non-coding upstream 208997 35755831 ~ 35760992 (+)
G221671 NA non-coding upstream 240522 35728900 ~ 35729467 (+)
G221730 NA non-coding downstream 2895 35975249 ~ 35977008 (+)
G221736 LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981 non-coding downstream 76683 36049037 ~ 36142824 (+)
G221744 NA non-coding downstream 105887 36078241 ~ 36078636 (+)
G221745 NA non-coding downstream 118624 36090978 ~ 36092132 (+)
G221749 NA non-coding downstream 146613 36118967 ~ 36119305 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 81174 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 751611 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 944391 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 972945 34986999 ~ 34997044 (+)
G221390 ate1 other upstream 1786752 34162581 ~ 34183237 (+)
G221737 NA other downstream 80162 36052516 ~ 36056690 (+)
G221878 NA other downstream 430794 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 1004052 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 1028731 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2763585 38735939 ~ 38744184 (+)

Expression


Co-expression Network