G221736 (LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981)
Chromosome Information
Item |
Value |
chromosome id |
NC_035921.1 |
NCBI id |
CM008324.1
|
chromosome length |
46505145 |
location |
36049037 ~ 36142824 (+) |
genome version |
Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
Sequence
>TU300878
AttctatttagtatttttttttattcttgtgaGAATATAAAAAGTACAGCAGAGCAAAGGATTCAAAACAAAGGACAAGCAAAGGTCAATCTGAGGGAAACAGAGGTGGACTGGGTTTGgcatggaaaagaagctgctcaGTCTTTTCTGAGTGGCAGCACCTCTTCCCGGATGCCCTCCTTGGTGACAATGCAGATTTTCAGGGCGTCTCCAGTATAGACATCTCGCTCCGCAGCAGAAATGAACACATCCTTCACCAGCTGCACAGCCTTCTCCAGGGTCAGGGGCAGCTGCTGCACGTTCTCCATGTTCTTGAAACCAATCTGGTTGTCAAGCAGTGGCTGCAGCATTGCACTTGCCGATCCCCCGGCTTTGTAAGAATCCCTCTGATAAGATCCAACAGGATCAAAACTGTATACCGCACCACGACCTTCCTCATCCAGTCCACCGATGATGTTGTAAACGTAGTATGGGAAAAATCGCCTTCCATACAGAATCGTTGATAGCATGGCAGCAATGGCTCCACTTGTCATGGACTTGTTGTTTGCATGTTTGTACATCTTCAGTCTTGCATCAATGATTTTGGTCAGTGTCAAACAGTCACCATGGAAACCACTGCAGCCAATCACTGTCGTGTCCGTCAGTTTATAGCATTTTGGGGAATCCCGGCTATGGATTGAATAGCCCTCACTTAAACGAGTATCTGAGGCCACAAGAGCAAAATCTTCCCCAGCAACCGCCAGCACAGTCCCTCCGTTGAAGGCGTACGGGGAGAACTTGTGCTGGGTGGCGGCGGCGGTGGCGGCATTGCGGGGCTGCATGGTGCCGGCCTGCGGTGCTCGGAGCTGCGCGGAAATCATCTCTAACCGAACCGAAACCCGCTGTATCACTGCAACATGGCGGACGGAAGTTGATATCGCTCTTTTCCGGTGACGCGAAGCACTTGTAATCAGTTCTTTCTATTTCAGAAATAGCTTTAATAAGATCATGTTATTATTAACCTGTTATTAACATCGTTATTGGATAAACACCCAATCATCCATTACTCC
>TU300879
GGACAAGCAAAAGGTCAATCTGAGGGAAACAGAGGTGGACTGGGTTTGgcatggaaaagaagctgctcaGTCTTTTCTGAGTGGCAGCACCTCTTCCCGGATGCCCTCCTTGGTGACAATGCAGATTTTCAGGGCGTCTCCAGTATAGACATCTCGCTCCGCAGCAGAAATGAACACATCCTTCACCAGCTGCACAGCCTTCTCCAGGGTCAGGGGCAGCTGCTGCACGTTCTCCATGTTCTTGAAACCAATCTGGTTGTCAAGCAGTGGCTGCAGCATTGCACTTGCCGATCCCCCGGCTTTGTAAGAATCCCTCTGATAAGATCCAACAGGATCAAAACTGTATACCGCACCACGACCTTCCTCATCCAGTCCACCGATGATGTTGTAAACGTAGTATGGGAAAAATCGCCTTCCATACAGAATCGTTGATAGCATGGCAGCAATGGCTCCACTTGTCATGGACTTGTTGTTTGCATGTTTGTACATCTTCAGTCTTGCATCAATGATTTTGGTCAGTGTCAAACAGTCACCATGGAAACCACTGCAGCCAATCACTGTCGTGTCCGTCAGTTTATAGCATTTTGGGGAATCCCGGCTATGGATTGAATAGCCCTCACTTAAACGAGTATCTGAGGCCACAAGAGCAAAATCTTCCCCAGCAACCGCCAGCACAGTCCCTCCGTTGAAGGCGTACGGGGAGAACTTGTGCTGGGTGGCGGCGGCGGTGGCGGCATTGCGGGGCTGCATGGTGCCGGCCTGCGGTGCTCGGAGCTGCGCGGAAATCATCTCTAACCGAACCGAAACCCGCTGTATCACTGCAACATGGCGGACGGAAGTTGATATCGCTCTTTTCCGGTGACGCGAAGCACTTGTAATCAGTTCTTTCTATTTCAGAAATAGCTTTAATAAGATCATGTTATTATTAACCTGTTATTAACATCGTTATTGGATAAACACCCAATCATCCATTACTCC
Function
NR:
description |
PREDICTED: proteasome subunit beta type-1-A |
GO: NA
KEGG: NA
RNA
RNA id |
representative |
length |
rna type |
GC content |
exon number |
start site |
end site |
TU300878 |
True |
1049 |
lncRNA |
0.48 |
6 |
36137578 |
36142824 |
TU300879 |
False |
978 |
lncRNA |
0.50 |
7 |
36049037 |
36142824 |
Neighbor
gene id |
symbol |
gene type |
direction |
distance |
location |
elovl5 |
elovl5,LOC107664697,LOC105911564
|
coding |
upstream |
111352 |
35900906 ~ 35937685 (+) |
klhl31 |
klhl31,LOC107664702
|
coding |
upstream |
180890 |
35863866 ~ 35868147 (+) |
LOC103029802 |
LOC108440917
|
coding |
upstream |
492901 |
35519412 ~ 35556136 (+) |
LOC103046445 |
lgmn
|
coding |
upstream |
563951 |
35462358 ~ 35485086 (+) |
pcnx1 |
pcnx1,pcnx
|
coding |
upstream |
592544 |
35385703 ~ 35456493 (+) |
perp |
perp
|
coding |
downstream |
4138 |
36146962 ~ 36153785 (+) |
LOC103034782 |
NA
|
coding |
downstream |
179516 |
36322340 ~ 36356570 (+) |
rab23 |
rab23,LOC107699166
|
coding |
downstream |
218620 |
36361444 ~ 36381976 (+) |
LOC103029801 |
dst
|
coding |
downstream |
280288 |
36423112 ~ 36574340 (+) |
LOC103028640 |
LOC108440913
|
coding |
downstream |
526811 |
36669635 ~ 36674106 (+) |
G221702 |
NA
|
non-coding |
upstream |
32248 |
35852260 ~ 36016789 (+) |
G221701 |
NA
|
non-coding |
upstream |
35034 |
35948868 ~ 36014003 (+) |
G221730 |
NA
|
non-coding |
upstream |
72029 |
35975249 ~ 35977008 (+) |
G221715 |
NA
|
non-coding |
upstream |
102152 |
35941848 ~ 35946885 (+) |
G221716 |
NA
|
non-coding |
upstream |
103344 |
35942875 ~ 35945693 (+) |
G221843 |
NA
|
non-coding |
downstream |
35633 |
36178457 ~ 36178912 (+) |
G221848 |
NA
|
non-coding |
downstream |
41527 |
36184351 ~ 36184623 (+) |
G221852 |
NA
|
non-coding |
downstream |
66639 |
36209463 ~ 36210038 (+) |
G221856 |
NA
|
non-coding |
downstream |
135683 |
36278507 ~ 36278752 (+) |
G221871 |
NA
|
non-coding |
downstream |
222777 |
36365601 ~ 36385539 (+) |
G221728 |
fbxo9
|
other |
upstream |
76683 |
35969989 ~ 35972354 (+) |
gclc |
gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787
|
other |
upstream |
160222 |
35870018 ~ 35888815 (+) |
LOC103031497 |
NA
|
other |
upstream |
830659 |
35208431 ~ 35218378 (+) |
srsf5 |
srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962
|
other |
upstream |
1023439 |
35018442 ~ 35025598 (+) |
synj2bp |
synj2bp,LOC108411060
|
other |
upstream |
1051993 |
34986999 ~ 34997044 (+) |
G221878 |
NA
|
other |
downstream |
260324 |
36403148 ~ 36409041 (+) |
mnat1 |
mnat1
|
other |
downstream |
833582 |
36976406 ~ 36991484 (+) |
slc38a6 |
NA
|
other |
downstream |
858261 |
37001085 ~ 37019302 (+) |
LOC103040744 |
LOC103040744,LOC108439706,LOC108263332
|
other |
downstream |
2593115 |
38735939 ~ 38744184 (+) |
oip5 |
NA
|
other |
downstream |
2752049 |
38894873 ~ 38898833 (+) |
Expression