G221736 (LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981)



Basic Information


Item Value
gene id G221736
gene name LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36049037 ~ 36142824 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU300878
AttctatttagtatttttttttattcttgtgaGAATATAAAAAGTACAGCAGAGCAAAGGATTCAAAACAAAGGACAAGCAAAGGTCAATCTGAGGGAAACAGAGGTGGACTGGGTTTGgcatggaaaagaagctgctcaGTCTTTTCTGAGTGGCAGCACCTCTTCCCGGATGCCCTCCTTGGTGACAATGCAGATTTTCAGGGCGTCTCCAGTATAGACATCTCGCTCCGCAGCAGAAATGAACACATCCTTCACCAGCTGCACAGCCTTCTCCAGGGTCAGGGGCAGCTGCTGCACGTTCTCCATGTTCTTGAAACCAATCTGGTTGTCAAGCAGTGGCTGCAGCATTGCACTTGCCGATCCCCCGGCTTTGTAAGAATCCCTCTGATAAGATCCAACAGGATCAAAACTGTATACCGCACCACGACCTTCCTCATCCAGTCCACCGATGATGTTGTAAACGTAGTATGGGAAAAATCGCCTTCCATACAGAATCGTTGATAGCATGGCAGCAATGGCTCCACTTGTCATGGACTTGTTGTTTGCATGTTTGTACATCTTCAGTCTTGCATCAATGATTTTGGTCAGTGTCAAACAGTCACCATGGAAACCACTGCAGCCAATCACTGTCGTGTCCGTCAGTTTATAGCATTTTGGGGAATCCCGGCTATGGATTGAATAGCCCTCACTTAAACGAGTATCTGAGGCCACAAGAGCAAAATCTTCCCCAGCAACCGCCAGCACAGTCCCTCCGTTGAAGGCGTACGGGGAGAACTTGTGCTGGGTGGCGGCGGCGGTGGCGGCATTGCGGGGCTGCATGGTGCCGGCCTGCGGTGCTCGGAGCTGCGCGGAAATCATCTCTAACCGAACCGAAACCCGCTGTATCACTGCAACATGGCGGACGGAAGTTGATATCGCTCTTTTCCGGTGACGCGAAGCACTTGTAATCAGTTCTTTCTATTTCAGAAATAGCTTTAATAAGATCATGTTATTATTAACCTGTTATTAACATCGTTATTGGATAAACACCCAATCATCCATTACTCC
>TU300879
GGACAAGCAAAAGGTCAATCTGAGGGAAACAGAGGTGGACTGGGTTTGgcatggaaaagaagctgctcaGTCTTTTCTGAGTGGCAGCACCTCTTCCCGGATGCCCTCCTTGGTGACAATGCAGATTTTCAGGGCGTCTCCAGTATAGACATCTCGCTCCGCAGCAGAAATGAACACATCCTTCACCAGCTGCACAGCCTTCTCCAGGGTCAGGGGCAGCTGCTGCACGTTCTCCATGTTCTTGAAACCAATCTGGTTGTCAAGCAGTGGCTGCAGCATTGCACTTGCCGATCCCCCGGCTTTGTAAGAATCCCTCTGATAAGATCCAACAGGATCAAAACTGTATACCGCACCACGACCTTCCTCATCCAGTCCACCGATGATGTTGTAAACGTAGTATGGGAAAAATCGCCTTCCATACAGAATCGTTGATAGCATGGCAGCAATGGCTCCACTTGTCATGGACTTGTTGTTTGCATGTTTGTACATCTTCAGTCTTGCATCAATGATTTTGGTCAGTGTCAAACAGTCACCATGGAAACCACTGCAGCCAATCACTGTCGTGTCCGTCAGTTTATAGCATTTTGGGGAATCCCGGCTATGGATTGAATAGCCCTCACTTAAACGAGTATCTGAGGCCACAAGAGCAAAATCTTCCCCAGCAACCGCCAGCACAGTCCCTCCGTTGAAGGCGTACGGGGAGAACTTGTGCTGGGTGGCGGCGGCGGTGGCGGCATTGCGGGGCTGCATGGTGCCGGCCTGCGGTGCTCGGAGCTGCGCGGAAATCATCTCTAACCGAACCGAAACCCGCTGTATCACTGCAACATGGCGGACGGAAGTTGATATCGCTCTTTTCCGGTGACGCGAAGCACTTGTAATCAGTTCTTTCTATTTCAGAAATAGCTTTAATAAGATCATGTTATTATTAACCTGTTATTAACATCGTTATTGGATAAACACCCAATCATCCATTACTCC

Function


NR:

description
PREDICTED: proteasome subunit beta type-1-A

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU300878 True 1049 lncRNA 0.48 6 36137578 36142824
TU300879 False 978 lncRNA 0.50 7 36049037 36142824

Neighbor


gene id symbol gene type direction distance location
elovl5 elovl5,LOC107664697,LOC105911564 coding upstream 111352 35900906 ~ 35937685 (+)
klhl31 klhl31,LOC107664702 coding upstream 180890 35863866 ~ 35868147 (+)
LOC103029802 LOC108440917 coding upstream 492901 35519412 ~ 35556136 (+)
LOC103046445 lgmn coding upstream 563951 35462358 ~ 35485086 (+)
pcnx1 pcnx1,pcnx coding upstream 592544 35385703 ~ 35456493 (+)
perp perp coding downstream 4138 36146962 ~ 36153785 (+)
LOC103034782 NA coding downstream 179516 36322340 ~ 36356570 (+)
rab23 rab23,LOC107699166 coding downstream 218620 36361444 ~ 36381976 (+)
LOC103029801 dst coding downstream 280288 36423112 ~ 36574340 (+)
LOC103028640 LOC108440913 coding downstream 526811 36669635 ~ 36674106 (+)
G221702 NA non-coding upstream 32248 35852260 ~ 36016789 (+)
G221701 NA non-coding upstream 35034 35948868 ~ 36014003 (+)
G221730 NA non-coding upstream 72029 35975249 ~ 35977008 (+)
G221715 NA non-coding upstream 102152 35941848 ~ 35946885 (+)
G221716 NA non-coding upstream 103344 35942875 ~ 35945693 (+)
G221843 NA non-coding downstream 35633 36178457 ~ 36178912 (+)
G221848 NA non-coding downstream 41527 36184351 ~ 36184623 (+)
G221852 NA non-coding downstream 66639 36209463 ~ 36210038 (+)
G221856 NA non-coding downstream 135683 36278507 ~ 36278752 (+)
G221871 NA non-coding downstream 222777 36365601 ~ 36385539 (+)
G221728 fbxo9 other upstream 76683 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 160222 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 830659 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 1023439 35018442 ~ 35025598 (+)
synj2bp synj2bp,LOC108411060 other upstream 1051993 34986999 ~ 34997044 (+)
G221878 NA other downstream 260324 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 833582 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 858261 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2593115 38735939 ~ 38744184 (+)
oip5 NA other downstream 2752049 38894873 ~ 38898833 (+)

Expression



Co-expression Network