G221745


Basic Information

Item Value
gene id G221745
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36090978 ~ 36092132 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU300894
GGagacactaaaacactaaaggGACACTGAGTAAACTCTGAAGGGTAAAATACAATAATGTGTAGAATGTAGACCATTTTAACATGcagttctcacacacacacacacattgactcACACTCAGACTTCCTCAGACCAACTGTTCAGCCCATCAGCAGCACAGACAGCTGCTCAGTCTCTCTCCTGCAGACCTGTCTGTCTGAAAGTCTGTGAACCCGAGCTGGACTTTAATTCCTGTAGATCTTCTCTGGAGCAGTCCACACCAGCCCACACATTTATCACCACAATCAGTTgcacttacatttacatattacatattatggCTGTGAAGATCCTATTACGTTATTAcgttaaaagttttatttaaaacatatatataatatgtgcaGCATGCTGTTTCATGCAAAACTGCAAGGCAATACTTAATTACACGTTCTTTACCTAATGCATGTCGCATATAAATCAACCGACCTGACAGAAGATGACCTACATTGTCTGACCATAATACAGGGCTTTTTATGAGCTGTTTATGCAGATTAAAGGTTTGTTGTTTAGGTCTAACTGTTTTGATTGAAAAAATGCTATTCTGTGATTTTGTATTGAATTATTTCATAACTGGTCACACAGATCTCTTATATTAACACCGTCTGTATGACAAATGGTCTGGGTTCTCTGCCTCTCCATGCCAGGGGCTTATTTATGAAAGTATGAGGTAACTATTACAGACACATAGCCATGCCTAAAACCGTCCTGATCGTCTGTGGCTCTAAATACCCCGCTGTGCTGGAATCGTTTGTTGCTAAGGGTTTCCCTGCAGGCCTAAGGAGGCCTTTCTCGTGACCACACAGTTAAAAATATAGGCCTTATCGCTGTCGCCTAACCTGCACTCATTAGCATAATGGTGTCGGCATTTGGCTTTTCAGACAGGATCATTTTAGTAACGGCTTTAACGCTCTGTCTGGATGCTGATTCTGCTAGTTGCTGCCCAGACccagaaacacaaaacacacttttgTATTGTCATAGCCAGCTGTTAGTAAGTTAGTGGGGGAGTTAGTGGGTTTGCAGGTAAGTTAGTGAGTTTGTGTTTAAATTGGTGGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU300894 True 1101 lncRNA 0.41 2 36090978 36092132

Neighbor

gene id symbol gene type direction distance location
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding upstream 15744 36070257 ~ 36075234 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding upstream 27324 35978261 ~ 36063654 (+)
elovl5 elovl5,LOC107664697,LOC105911564 coding upstream 153293 35900906 ~ 35937685 (+)
klhl31 klhl31,LOC107664702 coding upstream 222831 35863866 ~ 35868147 (+)
LOC103029802 LOC108440917 coding upstream 534842 35519412 ~ 35556136 (+)
wdr92 wdr92 coding downstream 10947 36103079 ~ 36108229 (+)
perp perp coding downstream 54830 36146962 ~ 36153785 (+)
LOC103034782 NA coding downstream 230208 36322340 ~ 36356570 (+)
rab23 rab23,LOC107699166 coding downstream 269312 36361444 ~ 36381976 (+)
LOC103029801 dst coding downstream 330980 36423112 ~ 36574340 (+)
G221744 NA non-coding upstream 12342 36078241 ~ 36078636 (+)
G221702 NA non-coding upstream 74189 35852260 ~ 36016789 (+)
G221701 NA non-coding upstream 76975 35948868 ~ 36014003 (+)
G221730 NA non-coding upstream 113970 35975249 ~ 35977008 (+)
G221715 NA non-coding upstream 144093 35941848 ~ 35946885 (+)
G221749 NA non-coding downstream 26835 36118967 ~ 36119305 (+)
G221843 NA non-coding downstream 86325 36178457 ~ 36178912 (+)
G221848 NA non-coding downstream 92219 36184351 ~ 36184623 (+)
G221852 NA non-coding downstream 117331 36209463 ~ 36210038 (+)
G221856 NA non-coding downstream 186375 36278507 ~ 36278752 (+)
G221737 NA other upstream 34288 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 118624 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 202163 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 872600 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 1065380 35018442 ~ 35025598 (+)
G221878 NA other downstream 311016 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 884274 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 908953 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2643807 38735939 ~ 38744184 (+)
oip5 NA other downstream 2802741 38894873 ~ 38898833 (+)

Expression


Co-expression Network