G221843


Basic Information

Item Value
gene id G221843
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36178457 ~ 36178912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301034
CCAATTACCTCCCCAGGCCCGCGCGGACGCTCGCGGAGCGCGCTGACGTCGCCCTCGAAACGGTGACGCAGTTACGCTGCTAATGTTTGCCACACCCATCGGCGGAGGTCTGGCCGGGAGTATCTGTCTGCCCGCTGTCGGGCCTTTAAATCTTTCTATTGTCTTAAAAAGCTCCAGCCTTTACCACCCATGAACCCACCAGCCCCGCTGCCTGCGCCCCTCCGAGCCTCCCCCGCAGCGGCGCAGGGCTGCTGTTAGCCGCGGAGCGCGCCTGTTTCAGGCCTTTCAGCGGGTTAGTGCTGTCTGAGACTGAGGCCTGGCCAGCAGAGGGCGCTCAGACCCGCAGCCAGAGCACCCTCACCACCCTCACTAGATAACACCTCAATACCACCACCAACTACAATTCAGTTACGTCTATATAACTGAGTTAAACAGCTTTAGGTTTATTCTGGgtca

Function

NR:

description
PREDICTED: patched domain-containing protein 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301034 True 456 lncRNA 0.59 1 36178457 36178912

Neighbor

gene id symbol gene type direction distance location
perp perp coding upstream 24672 36146962 ~ 36153785 (+)
wdr92 wdr92 coding upstream 70228 36103079 ~ 36108229 (+)
LOC103037384 ppp3r1,PPP3R1,LOC108441257,LOC107727894,LOC107699153,LOC106024317 coding upstream 78804 36076498 ~ 36099653 (+)
cnrip1 cnrip1,cnrip1b,LOC107699127,LOC107736745,LOC107580235 coding upstream 103223 36070257 ~ 36075234 (+)
arfgef3 arfgef3,LOC107751324,LOC107712337,LOC107688785 coding upstream 114803 35978261 ~ 36063654 (+)
LOC103034782 NA coding downstream 143428 36322340 ~ 36356570 (+)
rab23 rab23,LOC107699166 coding downstream 182532 36361444 ~ 36381976 (+)
LOC103029801 dst coding downstream 244200 36423112 ~ 36574340 (+)
LOC103028640 LOC108440913 coding downstream 490723 36669635 ~ 36674106 (+)
LOC103027910 NA coding downstream 512169 36691081 ~ 36700401 (+)
G221736 LOC107721174,LOC107699161,LOC107597712,LOC107701973,LOC107561981 non-coding upstream 35633 36049037 ~ 36142824 (+)
G221749 NA non-coding upstream 59152 36118967 ~ 36119305 (+)
G221745 NA non-coding upstream 86325 36090978 ~ 36092132 (+)
G221744 NA non-coding upstream 99821 36078241 ~ 36078636 (+)
G221701 NA non-coding upstream 164454 35948868 ~ 36014003 (+)
G221848 NA non-coding downstream 5439 36184351 ~ 36184623 (+)
G221852 NA non-coding downstream 30551 36209463 ~ 36210038 (+)
G221856 NA non-coding downstream 99595 36278507 ~ 36278752 (+)
G221871 NA non-coding downstream 186689 36365601 ~ 36385539 (+)
G221872 bag2 non-coding downstream 208340 36387252 ~ 36390194 (+)
G221737 NA other upstream 121767 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 206103 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 289642 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 960079 35208431 ~ 35218378 (+)
srsf5 srsf5,srsf5a,LOC107553206,LOC107736490,LOC108411053,LOC107602962 other upstream 1152859 35018442 ~ 35025598 (+)
G221878 NA other downstream 224236 36403148 ~ 36409041 (+)
mnat1 mnat1 other downstream 797494 36976406 ~ 36991484 (+)
slc38a6 NA other downstream 822173 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 2557027 38735939 ~ 38744184 (+)
oip5 NA other downstream 2715961 38894873 ~ 38898833 (+)

Expression


Co-expression Network