mnat1 (mnat1)


Basic Information

Item Value
gene id mnat1
gene name mnat1
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 36976406 ~ 36991484 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301259
ACAGCACACCATAAACACGAGCCCAGAGCGCAGTAACTTCTCTAATAAATATCCgattaaatacagaataaagcGCTATATCAGCAGATCTAACGCGTACCTGAGCTATGGACGATCAGGGCTGCCCGAGATGCAAAACCACTAAATACAGGAACCCGTCTCTGAAGCTGATGGttaatgtttgtggacacacaCTCTGTGAGAACTGTGTGGACATGCTGTTTGTACGGGGGTCCGGTAATTGTGTGCAGTGTGATACCCCCCTCAGAAAGAGTAATTTCCGACTGCAGCTCTTTGAAGATCCTGCTATTGATAAGGAGGTGGAGATTCGGAAGAGGGTTCTGAAAATttatAATAAGAGGGATTTTGACTTCTCCAGTCTCAGAGAGTATAACGACTACCTGGAGCAGGTGGAGGAAATCGtaTATAACCTGACGAATAACGTTGACGTTGAGAGAACAAAGCAGATAATGGAGCAGTACCAGAGAGAGAACCGAGACGTCATACAGAGAAACAAAGTCAAACTGTTACGTTGGA
>TU301261
CGCTCTCAGTTGCCGGCGTCTATTCTTCTGGCTCAGCATAAAGACAGAGCAGCACAGCTGGAGACTCAGATcgagaaacagaaacaaagcGTCAAACCAACCACCATCTTCTCCACAGGAATCCCCAAGgGTCAGACGGTGTCTCTCGCTCCAGTTATTCGTGTGGAGGAGGTGTTGTACAAGTATCAGCCGATTCATGTGGAGACGTATGGACCTCCCTTAcctgaactggagcagctggacagACTGGGgtATCTGAATCATGTGAGAACTGCGACGCCGCAGGATCTGGCTGGTGGTTACACATCTGAACTTGCCTGCCATCGAGCGCTACAGGACGCTTTCAGCGGCCTCTTTACATCGTTAGTATAACACACCCTCATGGTGTGTGTTAGCTGgtctgtgtttgtatgtttaatgCACAAATCAAGCCAACTGGATAACTTCTGTGAAGAGCATCCAGCAAGAACGAGAAGTTTATTAAAGGTCAAAAAATCTTGAGTTTTTCCAGTCAGCCAGGGCATGTTTATTATCTCAAGTTTGATTTAGTTTTTGCTTCCACATCAAGTCTCATAGACCTGCTAATGGGATTTCTGACACTGTATCACTGCTACAACACTGATAGGTTAAGCCTTATTtccaaaagaaataaaaggaatataaGGAGAATCTTGTACAGTCATTCTGCTGCGGAGTGAAGGCGTGTATGTGAAGGGAGTGAAGGGGGAATGTTTGAAAACAAAGCAACTCTCTGaattaacattaacatacaaaccaattaatattAAGTATAGAGATACTCTGATCTGGACTTTCAGTTGTGAAAATGGAGATTTCCCTTTGAAAGGAGAATATAGTCTAAAACTAGGCTTGTTCTTGGTCTACGAAACTGACCCAAATGAGTTGTGtgaagattttttaaaacattggtgGAGTTTCCCTGTAAGCACAAACAGGAAGCAAATCTATTAGAGATTACCAAACACCTCCACATGGTTTAAGAAGTGTGTGATGATTTCAGCCTGGTGCTAACTGGGCTACACAAACTTTATTACTTGTACCTCATGAAGTGTAAAACTAAAGACGATTTGTGCTTTTTTGGAAGACATACCCAAGTTTATTTTGTGTCATTTTCCCATGTATTCCAGAACAAACATTCTGCAGTCTAGTCCTGGTTGACTGACATACAGATGCATTGTATAGTCATTTTTGAAGcatatttgtaatttttgtaatttgtaaatgTTTGGTTTAAATAAATGGTAAAACAAG
>TU301262
CGCTCTCAGTTGCCGGCGTCTATTCTTCTGGCTCAGCATAAAGACAGAGCAGCACAGCTGGAGACTCAGATcgagaaacagaaacaaagcGTCAAACCAACCACCATCTTCTCCACAGGAATCCCCAAGgGTCAGACGGTGTCTCTCGCTCCAGTTATTCGTGTGGAGGAGGTGTTGTACAAGTATCAGCCGATTCATGTGGAGACGTATGGACCTCCCTTAcctgaactggagcagctggacagACTGGGgtATCTGAATCATGTGAGAACTGCGACGCCGCAGGATCTGGCTGGTGGTTACACATCTGAACTTGCCTGCCATCGAGCGCTACAGGACGCTTTCAGCGGCCTCTTTACATCGTTAGTATAACACACCCTCATGGTGTGTGTTAGCTGgtctgtgtttgtatgtttaatgCACAAATCAAGCCAACTGGATAACTTCTGTGAAGAGCATCCAGCAAGAACGAGAAGTTTATTAAAGGTCAAAAAATCTTGAGTTTTTCCAGTCAGCCAGGGCATGTTTATTATCTCAAGTTTGATTTAGTTTTTGCTTCCACATCAAGTCTCATAGACCTGCTAATGGGAATCTTGTACAGTCATTCTGCTGCGGAGTGAAGGCGTGTATGTGAAGGGAGTGAAGGGGGAATGTTTGAAAACAAAGCAACTCTCTGaattaacattaacatacaaaccaattaatattAAGTATAGAGATACTCTGATCTGGACTTTCAGTTGTGAAAATGGAGATTTCCCTTTGAAAGGAGAATATAGTCTAAAACTAGGCTTGTTCTTGGTCTACGAAACTGACCCAAATGAGTTGTGtgaagattttttaaaacattggtgGAATTACCAAACACCTCCACATGGTTTAAGAAGTGTGTGATGATTTCAGCCTGGTGCTAACTGGGCTACACAAACTTTATTACTTGTACCTCATGAAGTGTAAAACTAAAGACGATTTGTGCTTTTTTGGAAGACATACCCAAGTTTATTTTGTGTCATTTTCCCATGTATTCCAGAACAAACATTCTGCAGTCTAGTCCTGGTTGACTGACATACAGATGCATTGTATAGTCATTTTTGAAGcatatttgtaatttttgtaatttgtaaatgTTTGGTTTAAATAAATGGTAAAACAAG
>TU301263
CGCTCTCAGTTGCCGGCGTCTATTCTTCTGGCTCAGCATAAAGACAGAGCAGCACAGCTGGAGACTCAGATcgagaaacagaaacaaagcGTCAAACCAACCACCATCTTCTCCACAGGAATCCCCAAGgGTCAGACGGTGTCTCTCGCTCCAGTTATTCGTGTGGAGGAGGTGTTGTACAAGTATCAGCCGATTCATGTGGAGACGTATGGACCTCCCTTAcctgaactggagcagctggacagACTGGGgtATCTGAATCATGTGAGAACTGCGACGCCGCAGGATCTGGCTGGTGGTTACACATCTGAACTTGCCTGCCATCGAGCGCTACAGGACGCTTTCAGCGGCCTCTTTACATCGTTAGTATAACACACCCTCATGGTGTGTGTTAGCTGgtctgtgtttgtatgtttaatgCACAAATCAAGCCAACTGGATAACTTCTGTGAAGAGCATCCAGCAAGAACGAGAAGTTTATTAAAGGTCAAAAAATCTTGAGTTTTTCCAGTCAGCCAGGGCATGTTTATTATCTCAAGTTTGATTTAGTTTTTGCTTCCACATCAAGTCTCATAGACCTGCTAATGGGATTTCTGACACTGTATCACTGCTACAACACTGATAGGTTAAGCCTTATTtccaaaagaaataaaaggaatataaGGAGAATCTTGTACAGTCATTCTGCTGCGGAGTGAAGGCGTGTATGTGAAGGGAGTGAAGGGGGAATGTTTGAAAACAAAGCAACTCTCTGaattaacattaacatacaaaccaattaatattAAGTATAGAGATACTCTGATCTGGACTTTCAGTTGTGAAAATGGAGATTTCCCTTTGAAAGGAGAATATAGTCTAAAACTAGGCTTGTTCTTGGTCTACGAAACTGACCCAAATGAGTTGTGtgaagattttttaaaacattggtgGAGTTTCCCAAACACCTCCACATGGTTTAAGAAGTGTGTGATGATTTCAGCCTGGTGCTAACTGGGCTACACAAACTTTATTACTTGTACCTCATGAAGTGTAAAACTAAAGACGATTTGTGCTTTTTTGGAAGACATACCCAAGTTTATTTTGTGTCATTTTCCCATGTATTCCAGAACAAACATTCTGCAGTCTAGTCCTGGTTGACTGACATACAGATGCATTGTATAGTCATTTTTGAAGcatatttgtaatttttgtaatttgtaaatgTTTGGTTTAAATAAATGGTAAAACAAG
>XM_022684773.1
CCTGaaaacaggtgtgaaaataaaaCCTGCGTACTTTACAGCACACCATAAACACGAGCCCAGAGCGCAGTAACTTCTCTAATAAATATCCgattaaatacagaataaagcGCTATATCAGCAGATCTAACGCGTACCTGAGCTATGGACGATCAGGGCTGCCCGAGATGCAAAACCACTAAATACAGGAACCCGTCTCTGAAGCTGATGGttaatgtttgtggacacacaCTCTGTGAGAACTGTGTGGACATGCTGTTTGTACGGGGGTCCGGTAATTGTGTGCAGTGTGATACCCCCCTCAGAAAGAGTAATTTCCGACTGCAGCTCTTTGAAGATCCTGCTATTGATAAGGAGGTGGAGATTCGGAAGAGGGTTCTGAAAATttatAATAAGAGGGATTTTGACTTCTCCAGTCTCAGAGAGTATAACGACTACCTGGAGCAGGTGGAGGAAATCGtaTATAACCTGACGAATAACGTTGACGTTGAGAGAACAAAGCAGATAATGGAGCAGTACCAGAGAGAGAACCGAGACGTCATACAGAGAAACAAAGTCAAACTGGTCAGTgAACGCTCTCAGTTGCCGGCGTCTATTCTTCTGGCTCAGCATAAAGACAGAGCAGCACAGCTGGAGACTCAGATcgagaaacagaaacaaagcGTCAAACCAACCACCATCTTCTCCACAGGAATCCCCAAGgGTCAGACGGTGTCTCTCGCTCCAGTTATTCGTGTGGAGGAGGTGTTGTACAAGTATCAGCCGATTCATGTGGAGACGTATGGACCTCCCTTAcctgaactggagcagctggacagACTGGGgtATCTGAATCATGTGAGAACTGCGACGCCGCAGGATCTGGCTGGTGGTTACACATCTGAACTTGCCTGCCATCGAGCGCTACAGGACGCTTTCAGCGGCCTCTTTACATCGTTAGTATAACACACCCTCATGGTGTGTGTTAGCTGgtctgtgtttgtatgtttaatgCACAAATCAAGCCAACTGGATAACTTCTGTGAAGAGCATCCAGCAAGAACGAGAAGTTTATTAAAGGTCAAAAAATCTTGAGTTTTTCCAGTCAGCCAGGGCATGTTTATTATCTCAAGTTTGATTTAGTTTTTGCTTCCACATCAAGTCTCATAGACCTGCTAATGGGAATCTTGTACAGTCATTCTGCTGCGGAGTGAAGGCGTGTATGTGAAGGGAGTGAAGGGGGAATGTTTGAAAACAAAGCAACTCTCTGaattaacattaacatacaaaccaattaatattAAGTATAGAGATACTCTGATCTGGACTTTCAGTTGTGAAAATGGAGATTTCCCTTTGAAAGGAGAATATAGTCTAAAACTAGGCTTGTTCTTGGTCTACGAAACTGACCCAAATGAGTTGTGtgaagattttttaaaacattggtgGAGTTTCCAAACACCTCCACATGGTTTAAGAAGTGTGTGATGATTTCAGCCTGGTGCTAACTGGGCTACACAAACTTTATTACTTGTACCTCATGAAGTGTAAAACTAAAGACGATTTGTGCTTTTTTGGAAGACATACCCAAGTTTATTTTGTGTCATTTTCCCATGTATTCCAGAACAAACATTCTGCAGTCTAGTCCTGGTTGACTGACATACAGATGCATTGTATAGTCATTTTTGAAGcatatttgtaatttttgtaatttgtaaatgTTTGGTTTAAATAAATGGTAAAACAAGTTGAAA

Function

symbol description
mnat1 Predicted to enable cyclin-dependent protein serine/threonine kinase activator activity and metal ion binding activity. Predicted to be involved in DNA repair; regulation of cyclin-dependent protein serine/threonine kinase activity; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within nucleotide-excision repair and positive regulation of cyclin-dependent protein serine/threonine kinase activity. Predicted to be located in nucleus. Predicted to be part of transcription factor TFIIH holo complex. Orthologous to human MNAT1 (MNAT1 component of CDK activating kinase).

NR:

description
CDK-activating kinase assembly factor MAT1 isoform X1

GO:

id name namespace
GO:0009987 cellular process biological_process
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K10842 MNAT1; CDK-activating kinase assembly factor MAT1

RNA

RNA id representative length rna type GC content exon number start site end site
TU301259 False 537 TUCP 0.45 5 36976443 36987654
TU301261 False 1272 lncRNA 0.41 3 36981075 36991478
TU301262 False 1154 lncRNA 0.42 5 36981075 36991478
TU301263 False 1233 lncRNA 0.41 4 36981075 36991478
XM_022684773.1 True 1733 mRNA 0.42 9 36976406 36991484

Neighbor

gene id symbol gene type direction distance location
LOC103023682 LOC108414060 coding upstream 33665 36936061 ~ 36942741 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding upstream 49009 36899056 ~ 36927397 (+)
pcnx4 pcnx4,LOC107683173 coding upstream 98476 36858952 ~ 36877930 (+)
LOC103026999 NA coding upstream 120243 36827033 ~ 36856163 (+)
tdrd9 tdrd9 coding upstream 209173 36735850 ~ 36767233 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding downstream 31853 37023337 ~ 37081624 (+)
hif1a NA coding downstream 107914 37099398 ~ 37143669 (+)
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding downstream 655228 37646712 ~ 37655501 (+)
LOC111195988 NA coding downstream 875311 37866795 ~ 37869273 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding downstream 1080783 38072267 ~ 38075115 (+)
G221995 NA non-coding upstream 18213 36834027 ~ 36958193 (+)
G221993 NA non-coding upstream 52508 36875240 ~ 36923898 (+)
G222004 NA non-coding upstream 78774 36888680 ~ 36897632 (+)
G221973 NA non-coding upstream 248317 36726518 ~ 36728089 (+)
G221891 NA non-coding upstream 352611 36620288 ~ 36623795 (+)
G222103 NA non-coding downstream 59736 37051220 ~ 37052681 (+)
G222105 NA non-coding downstream 75033 37066517 ~ 37151937 (+)
G222134 NA non-coding downstream 162748 37154232 ~ 37154626 (+)
G222136 NA non-coding downstream 163460 37154944 ~ 37155350 (+)
G222138 NA non-coding downstream 171185 37162669 ~ 37163290 (+)
G221878 NA other upstream 567365 36403148 ~ 36409041 (+)
G221737 NA other upstream 919716 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 1004052 35969989 ~ 35972354 (+)
gclc gclc,LOC107597697,LOC107664701,LOC107712340,LOC107688787 other upstream 1087591 35870018 ~ 35888815 (+)
LOC103031497 NA other upstream 1758028 35208431 ~ 35218378 (+)
slc38a6 NA other downstream 9601 37001085 ~ 37019302 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 1744455 38735939 ~ 38744184 (+)
oip5 NA other downstream 1903389 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 2206223 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 2687018 39678502 ~ 39714015 (+)

Expression


Co-expression Network