G222139


Basic Information

Item Value
gene id G222139
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37163573 ~ 37164290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301418
ggcgaacgtgctaaccactaagccaccgtgccgcccatcAAAGACAGTTAAAGAACCATTCCAGGTTCTACCTCAAAAAACTGACTGAGAGAATCAGTTGGCATCTAAGCAGAAGGTggtactttgaagaatctaaagcataaaacattttttagattttagattgtttaatacttttttgttttcttcctaATCTCATATGCAAATTATAAATGCATAAACAAATTGAATGAGAAAGGGTGTGTACAAACATCTGTATAGCAGTGATGTACAGTTGAGAATGTTCAGTTCAGTGTTTGTAGGTGTCACATGTCCAGTAGCCAGTCTTCTCAGCTTTTGTACCATGATGATGGATACATTGAGACCTTTTGGCTCTCACTGTCCATTAGTATAATGTATACCTGAGATTTGTTGCTGGTTGAAATTTCAATCATTTCTCCATCTCCCTGTATAATGAACTTGCAATTATACTTTGGAGGATTCGGCAAAGTGAGAAACATCTTAATAAGATGTTCAATACCTGCGAGCAGAACTTTACGGTTGGCCATCTctttctccatccagcactttCTTTTAAGTAGTCCTTCGACTGTTATGAAAGAAAACGTAAACTCGCATTTGGTTTTGATTGTCACAATCTTCTCTGGTGAATTTGTGGAAGTGTACAAGACCGAAAACCTGTTGCACACAACCTTCAGCGCTTGTACTTTACTTGCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301418 True 718 lncRNA 0.38 1 37163573 37164290

Neighbor

gene id symbol gene type direction distance location
hif1a NA coding upstream 19904 37099398 ~ 37143669 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding upstream 81949 37023337 ~ 37081624 (+)
LOC103023682 LOC108414060 coding upstream 220832 36936061 ~ 36942741 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding upstream 236176 36899056 ~ 36927397 (+)
pcnx4 pcnx4,LOC107683173 coding upstream 285643 36858952 ~ 36877930 (+)
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding downstream 482422 37646712 ~ 37655501 (+)
LOC111195988 NA coding downstream 702505 37866795 ~ 37869273 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding downstream 907977 38072267 ~ 38075115 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding downstream 1093213 38257503 ~ 38265513 (+)
sobp sobp coding downstream 1195320 38359610 ~ 38425069 (+)
G222138 NA non-coding upstream 283 37162669 ~ 37163290 (+)
G222136 NA non-coding upstream 8223 37154944 ~ 37155350 (+)
G222134 NA non-coding upstream 8947 37154232 ~ 37154626 (+)
G222105 NA non-coding upstream 11636 37066517 ~ 37151937 (+)
G222103 NA non-coding upstream 110892 37051220 ~ 37052681 (+)
G222214 NA non-coding downstream 220527 37384817 ~ 37389327 (+)
G222217 NA non-coding downstream 236961 37401251 ~ 37401683 (+)
G222219 NA non-coding downstream 241796 37406086 ~ 37406405 (+)
G222230 NA non-coding downstream 323350 37487640 ~ 37487908 (+)
G222234 NA non-coding downstream 329340 37493630 ~ 37494268 (+)
slc38a6 NA other upstream 144271 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 172089 36976406 ~ 36991484 (+)
G221878 NA other upstream 754532 36403148 ~ 36409041 (+)
G221737 NA other upstream 1106883 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 1191219 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 1571649 38735939 ~ 38744184 (+)
oip5 NA other downstream 1730583 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 2033417 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 2514212 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 3166783 40331073 ~ 40339652 (+)

Expression


Co-expression Network