CI01000009_00318494_00322434


Basic Information

Item Value
gene id CI01000009_00318494_00322434
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 318256 ~ 323055 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00318494_00322434.mRNA
GTATAAAATTCCGAGTTCTGGTCACATGTATTCAGAATGACCACAGTCTGTGTGCGAAATGGGCAGATTTTAAAAAGGTAGCAAACAAAGAAGATCAAATCTATGGGAAAAAGCAGGCGGAACCCAACGCATCATCGAAAAACTGCAGAAAGCTGATATTTTGAATAGAAACACTGAACGTTCCTCAGATATATGGTCAGAGCTTGCATTAAGTTTTTTTAACAAATCGCTTTTGGTCATGGAGTATTTGGACCACAAACTGAGAGGGCGTGAAAGAAACGATGCAGAAACCTCACAGCCTGTAAACGAACAGCCCACAGATGTCCCATTTCAGCAAATATACGAAGATCCCACAGACGCAATATACGAAGAGCCCACAGATGTCCCATTACAGCCACACACTGAGTCAGAGGGTCTAAACAGTACACCTGAGGCCATGAAGGTACAGGATGGAGAGCCTGGAGTCAATGTTTGGAGACAATGTCCAGAGGTAAAAAAGACATTTTCTATCTCTATGGAAAGAAAAGTGTGGGATAGAATCAGGCCACTAATAGGCTCTAAGTTAAGACAACCTTGGACAGACCATGTGTATGACTGCTTTCGAACAAAAAATCCATGTTGTACTCTCTCATTTAAATATCAACATGTGAAGACTCCCTGGAGTAGAAAGAAAAATCTTCCATACTTACAAATTAAAGCAGTCTGCACATTTCCCTCTTGCCCAGCCAAATACTCATTCATAGTGCAAAATAAACCTGCTGAACTGGGCCAAGATGTGAAAATGTTAGTACAACAAACCGGAGATATACAACACAAACTTTCAGAGAAGAAGGCTAGGCCGGCAACCCACCTAAAAAGAGGAAAAATAGCAAAGGCCCTACTATCGCATGGACCCAGCGAGCATTTTTACAGCACACTTGAAACAACACCAACCGAGGAACTCCTGGCTGGGAACATGACTGAATGTCTCAGTAAAAAAGTGTTGAAGGTAATAAGCTCGGAAATGAGAAAGCAAGAATCCATCAGCTCTAACATCATGATGGAAATATCCTTAATGCAGACGATATTTAAGGACATTGACAAAAAATACTTCAAAATACCAGGCTACATACAGCTTTTCAGTGTGAATCCGTTCATTGTTCATTTGTACTCTGAGTTGGGCATCAGCATTCTTGTGCATCATTTGCAAAGTAAGTCTCCTGTGTCCCTCTATCTTGATGCCACTGGTGGTGTAGTGTCAAAAATTCCAGAACAGCCAAAGCCGGTGTTGTACTATGCGCTCACTCTTCCAAGAAATGCAGGTCGAGATGCACCACTGCCTATTTGTGAAATGCTCTCCAATGAGCACTCAGTACCACCAATCACATTTTGGCTCATGCAATTCACTTTGCATTTATCAAAGTACACCCAAATAAAAATTCACCAGGTCGAAACTGATTATAGTTGGGCTTTAATACAAAGTGTGATGATTGCTTTCAACAAAGAGCACATCAGCACTTACCTCGACAGAGCATATGACTTCTGCATGAACAAAAAATCAGTGGATGAAATGAAGTCATATACTGTACTACACATTTGCTCTGCTCACATCCTGAAAGCTGTGAGACAGGCAATCTGTAGGCAAACAGATGACAAAGGGCTGAGAGACTTTGCCACATATGCTTTCGCAAGACTCCAAAATGCCAGCAACATGACTGAATCAAGAAAGTTGTTCCGTGCATTATGTGCCTTGCTCACAACCCAACAAAACACAGACCTCGTCAAAGAAAGTCTGCGTATTTTGGAGAGTGTCATTTCAAGATCCAAAGAGGAGCCACTGGAAGAAACTCCCCAATCTGAAGACTGGAAAATGTGTGAAAGTGAAGACAGAACACATGCAACGAATATCAGTGGCAAATCACCATTCTATGCCTTTTTTCAGCAGATTATGAAAGAGGTGAAGGAAGAAATGGTTGATGATGACACAGGGTTGGCAAAAGAAAACAACCCATACTTTTGTCCAGGCATCCTCACAGTCCTCTTTGATACGTACCTTGCCATCTTTCCTCTTTGGAGTGGCTTGCTGTTGGGAGACCTGATGGATGAACAGGACATGGAGACAACAAAGAAACAACCAAAAACAAGAGATACCAACTGTCACATTGAAAGGTGGTTTGGAATTGTCAAACATTCATAATGCATAAAGAAAAAAAAGTCAAACCAGGGACCTTCATAAGAAAAATGCACAAGTCTCTACAAGCGAGGTATACAGAGCATATCATCAAGCATGAACTTCCTCAAAAACCTGAGGCACCTTTGAACCTTGATCAGTCTCAAGAAACTTGGAAGAAGAAGGAAGAATGTTTCCCATCCACCAAATTCAAATTCTTTTCTGTTCCACATAAAATACCTGCTCCCCAAAAAAGACGATCAAGAAGGATGTGGAAGTGGAAACTTCAAGTTCTGATGCATGTCAGCCTCCTGCAGAGGGACTCCATGTAGATGAACAGGTAATGAATCATAGTACAAAACTTTAAACTATTAATTGCATATATGAAGGTACACTATTATTTACTCTAATGAAGTCATATTAACAGAAGAAGTTCAGTATCAAAGGTTTGAGGCTGTTTTGATGGACACACACAGTTCCAGTTCCAATAGCTTTTGAAAACACACTCACAGCCTTTCAAAAGCAGTTGGAAAATATTTATATTAATGTAAAGAACAGCTGAAATTTGTTTGTTGGAAAATATTTATATTAATGTAAAGAACAGCTGAAAAGTGTTTAATGATAATTTTAACTGAAGAAGTTTAAAAA

Function

NR:

description
PREDICTED: uncharacterized protein LOC102798522, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00318494_00322434.mRNA True 2797 mRNA 0.40 2 318256 323055

Neighbor

gene id symbol gene type direction distance location
CI01000009_00300778_00315275 NA coding upstream 2851 300778 ~ 315405 (+)
CI01000009_00260081_00285692 RNF17 coding upstream 32545 259906 ~ 285711 (+)
CI01000009_00242093_00247335 FDX1 coding upstream 70913 241961 ~ 247343 (+)
CI01000009_00179808_00221387 UGGT2 coding upstream 96869 179808 ~ 221387 (+)
CI01000009_00094836_00095813 NA coding upstream 221507 94371 ~ 97230 (+)
CI01000009_00326208_00333904 NA coding downstream 3153 326208 ~ 334301 (+)
CI01000009_00343750_00344964 TRIM13 coding downstream 20695 343750 ~ 345290 (+)
CI01000009_00363403_00368182 RNASEH2B coding downstream 40348 363403 ~ 368216 (+)
CI01000009_00378726_00379550 NA coding downstream 55671 378726 ~ 379804 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 217714 540769 ~ 545997 (+)
G50508 NA non-coding upstream 95408 176066 ~ 222848 (+)
G50480 NA non-coding upstream 200256 117563 ~ 118000 (+)
G50473 NA non-coding upstream 219200 97886 ~ 99056 (+)
G50469 NA non-coding upstream 238740 79280 ~ 79516 (+)
G50662 NA non-coding downstream 11984 335039 ~ 335961 (+)
G50664 NA non-coding downstream 35423 358478 ~ 358706 (+)
G50666 NA non-coding downstream 57493 380548 ~ 380857 (+)
G50627 NA non-coding downstream 58159 381214 ~ 385408 (+)
G50639 NA non-coding downstream 65143 388198 ~ 388652 (+)
G50920 NA other downstream 446786 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1099792 1429873 ~ 1435328 (+)
G51122 NA other downstream 1357091 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1571180 1897343 ~ 1919516 (+)
G51274 NA other downstream 1932044 2255099 ~ 2350486 (+)

Expression


Co-expression Network