G222217


Basic Information

Item Value
gene id G222217
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37401251 ~ 37401683 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301511
attttttctaactcaaactcattggcattggctcattttttgtgaaaaacatatatcaaaacacattttcgataaacacacactgtacaccccccccccccacacacacacatttatattacatacagtatgtttggccaagggctaataaacattgcttcatttgtaaatttgaaactaaacaaattttctactcatatcttgagtttaattcattttcttttacattttattaaaaaactaataaaaaaagagtagcactttttgaaagaaatgtaacataagaaaggtaaagggtaaatattaaccatgtaagctgtttatattgcttgcaatttaggtgaagcaagcatgtgtaaagcattttaatgtaaaattgcttcattttgctgaattaaatacaagtaacaaagtaaacgagtaacaaaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301511 True 433 lncRNA 0.29 1 37401251 37401683

Neighbor

gene id symbol gene type direction distance location
hif1a NA coding upstream 257582 37099398 ~ 37143669 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding upstream 319627 37023337 ~ 37081624 (+)
LOC103023682 LOC108414060 coding upstream 458510 36936061 ~ 36942741 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding upstream 473854 36899056 ~ 36927397 (+)
pcnx4 pcnx4,LOC107683173 coding upstream 523321 36858952 ~ 36877930 (+)
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding downstream 245029 37646712 ~ 37655501 (+)
LOC111195988 NA coding downstream 465112 37866795 ~ 37869273 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding downstream 670584 38072267 ~ 38075115 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding downstream 855820 38257503 ~ 38265513 (+)
sobp sobp coding downstream 957927 38359610 ~ 38425069 (+)
G222214 NA non-coding upstream 11924 37384817 ~ 37389327 (+)
G222139 NA non-coding upstream 236961 37163573 ~ 37164290 (+)
G222138 NA non-coding upstream 237961 37162669 ~ 37163290 (+)
G222136 NA non-coding upstream 245901 37154944 ~ 37155350 (+)
G222134 NA non-coding upstream 246625 37154232 ~ 37154626 (+)
G222219 NA non-coding downstream 4403 37406086 ~ 37406405 (+)
G222230 NA non-coding downstream 85957 37487640 ~ 37487908 (+)
G222234 NA non-coding downstream 91947 37493630 ~ 37494268 (+)
G222241 NA non-coding downstream 236070 37637753 ~ 37638037 (+)
G222249 NA non-coding downstream 389982 37791665 ~ 37792064 (+)
slc38a6 NA other upstream 381949 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 409767 36976406 ~ 36991484 (+)
G221878 NA other upstream 992210 36403148 ~ 36409041 (+)
G221737 NA other upstream 1344561 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 1428897 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 1334256 38735939 ~ 38744184 (+)
oip5 NA other downstream 1493190 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 1796024 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 2276819 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 2929390 40331073 ~ 40339652 (+)

Expression


Co-expression Network