G222249


Basic Information

Item Value
gene id G222249
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37791665 ~ 37792064 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301546
tgggcggcacggtggcgcagtgggtagcacttccgcctcacagcaagacggcctgggttcgattcccggctagggcgacccgggtctttctgtgtggagtttgcacgttctccccgtgtctgcgtgggtttcctccgggttctccggtttcctcccacagtccaaagacggcacgttcaggctaattggaacttgattgaaattgccccttaggtgtgagtgcgtgagtgaatgtgtctgtgtgtctgtctgtgtctgtctgccctgcgatggattggcggcctgtccagggtgtatcctgccttctgcccgatgcctgctgggataggctccagcccccccccccccgcgacccttcacggataaagcggttgacaatgagatgagatgagatgagaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301546 True 400 lncRNA 0.59 1 37791665 37792064

Neighbor

gene id symbol gene type direction distance location
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding upstream 136164 37646712 ~ 37655501 (+)
hif1a NA coding upstream 647996 37099398 ~ 37143669 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding upstream 710041 37023337 ~ 37081624 (+)
LOC103023682 LOC108414060 coding upstream 848924 36936061 ~ 36942741 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding upstream 864268 36899056 ~ 36927397 (+)
LOC111195988 NA coding downstream 74731 37866795 ~ 37869273 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding downstream 280203 38072267 ~ 38075115 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding downstream 465439 38257503 ~ 38265513 (+)
sobp sobp coding downstream 567546 38359610 ~ 38425069 (+)
LOC103043501 pqlc3,LOC107706924,LOC107675554,LOC107681540,LOC107757120 coding downstream 644505 38436569 ~ 38444698 (+)
G222241 NA non-coding upstream 153628 37637753 ~ 37638037 (+)
G222234 NA non-coding upstream 297397 37493630 ~ 37494268 (+)
G222230 NA non-coding upstream 303757 37487640 ~ 37487908 (+)
G222219 NA non-coding upstream 385260 37406086 ~ 37406405 (+)
G222217 NA non-coding upstream 389982 37401251 ~ 37401683 (+)
G222251 NA non-coding downstream 34922 37826986 ~ 37827251 (+)
G222252 NA non-coding downstream 50482 37842546 ~ 37843074 (+)
G222254 NA non-coding downstream 64083 37856147 ~ 37856454 (+)
G222260 NA non-coding downstream 140421 37932485 ~ 37933005 (+)
G222261 NA non-coding downstream 147237 37939301 ~ 37939897 (+)
slc38a6 NA other upstream 772363 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 800181 36976406 ~ 36991484 (+)
G221878 NA other upstream 1382624 36403148 ~ 36409041 (+)
G221737 NA other upstream 1734975 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 1819311 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 943875 38735939 ~ 38744184 (+)
oip5 NA other downstream 1102809 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 1405643 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 1886438 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 2539009 40331073 ~ 40339652 (+)

Expression


Co-expression Network