G222252


Basic Information

Item Value
gene id G222252
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 37842546 ~ 37843074 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301549
agctcttcaaagagcccttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttccactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaacacactaattacttctaacctcatttccttcttcccctccttcactcctctatcccactatttcccttcgacctccttaagccctatctaaaaatgttttatcttaacttctattacttttgtacttgactattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301549 True 529 lncRNA 0.39 1 37842546 37843074

Neighbor

gene id symbol gene type direction distance location
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding upstream 187045 37646712 ~ 37655501 (+)
hif1a NA coding upstream 698877 37099398 ~ 37143669 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding upstream 760922 37023337 ~ 37081624 (+)
LOC103023682 LOC108414060 coding upstream 899805 36936061 ~ 36942741 (+)
ppm1a ppm1aa,LOC108414062,LOC107707101,LOC107757136,LOC107588600 coding upstream 915149 36899056 ~ 36927397 (+)
LOC111195988 NA coding downstream 23721 37866795 ~ 37869273 (+)
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding downstream 229193 38072267 ~ 38075115 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding downstream 414429 38257503 ~ 38265513 (+)
sobp sobp coding downstream 516536 38359610 ~ 38425069 (+)
LOC103043501 pqlc3,LOC107706924,LOC107675554,LOC107681540,LOC107757120 coding downstream 593495 38436569 ~ 38444698 (+)
G222251 NA non-coding upstream 15295 37826986 ~ 37827251 (+)
G222249 NA non-coding upstream 50482 37791665 ~ 37792064 (+)
G222241 NA non-coding upstream 204509 37637753 ~ 37638037 (+)
G222234 NA non-coding upstream 348278 37493630 ~ 37494268 (+)
G222230 NA non-coding upstream 354638 37487640 ~ 37487908 (+)
G222254 NA non-coding downstream 13073 37856147 ~ 37856454 (+)
G222260 NA non-coding downstream 89411 37932485 ~ 37933005 (+)
G222261 NA non-coding downstream 96227 37939301 ~ 37939897 (+)
G222265 NA non-coding downstream 182419 38025493 ~ 38025862 (+)
G222280 NA non-coding downstream 244230 38087304 ~ 38087600 (+)
slc38a6 NA other upstream 823244 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 851062 36976406 ~ 36991484 (+)
G221878 NA other upstream 1433505 36403148 ~ 36409041 (+)
G221737 NA other upstream 1785856 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 1870192 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 892865 38735939 ~ 38744184 (+)
oip5 NA other downstream 1051799 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 1354633 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 1835428 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 2487999 40331073 ~ 40339652 (+)

Expression


Co-expression Network