G222280


Basic Information

Item Value
gene id G222280
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 38087304 ~ 38087600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU301579
atgtttaatttcatgatgtctcttaatataaaactccttaattacggcaacttttagactctttgccccgtttttctgcactagaaatgcgcaccctctccacttttagactctttgccctgtttttctgcactagaaatgcacaccctctccacttttagactctttgccccgtttttctgcgctagaaatgcgcactctctccacttttagactctttgccccgtttttctgcgctagaaatgcgcactctctccgactctttggcccgtttctgacacctagcgttcaaacttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU301579 True 297 lncRNA 0.44 1 38087304 38087600

Neighbor

gene id symbol gene type direction distance location
rdh14 rdh14,rdh14a,LOC107757127,LOC107585474,LOC107675576,LOC107668816,LOC106607934 coding upstream 12189 38072267 ~ 38075115 (+)
LOC111195988 NA coding upstream 218031 37866795 ~ 37869273 (+)
osr1 LOC108440809,LOC107588719,LOC107668777,LOC107757107,LOC107548611 coding upstream 431803 37646712 ~ 37655501 (+)
hif1a NA coding upstream 943635 37099398 ~ 37143669 (+)
prkch prkcha,prkch,LOC107675581,LOC107757130,LOC107707065,LOC107087558,LOC106909499 coding upstream 1005680 37023337 ~ 37081624 (+)
c25h6orf203 cunh6orf203,LOC103046561 coding downstream 169903 38257503 ~ 38265513 (+)
sobp sobp coding downstream 272010 38359610 ~ 38425069 (+)
LOC103043501 pqlc3,LOC107706924,LOC107675554,LOC107681540,LOC107757120 coding downstream 348969 38436569 ~ 38444698 (+)
arg2 arg2,LOC107675544 coding downstream 560985 38648585 ~ 38658342 (+)
LOC103041043 rdh11,LOC108439707,LOC107585486,LOC107724212,LOC107588583,LOC107705384,LOC105896832 coding downstream 592029 38679629 ~ 38688615 (+)
G222265 NA non-coding upstream 61442 38025493 ~ 38025862 (+)
G222261 NA non-coding upstream 147407 37939301 ~ 37939897 (+)
G222260 NA non-coding upstream 154299 37932485 ~ 37933005 (+)
G222254 NA non-coding upstream 230850 37856147 ~ 37856454 (+)
G222252 NA non-coding upstream 244230 37842546 ~ 37843074 (+)
G222283 NA non-coding downstream 57830 38145430 ~ 38145737 (+)
G222284 NA non-coding downstream 63999 38151599 ~ 38152139 (+)
G222294 NA non-coding downstream 110003 38197603 ~ 38198962 (+)
G222355 NA non-coding downstream 329513 38417113 ~ 38434387 (+)
G222362 NA non-coding downstream 360602 38448202 ~ 38448460 (+)
slc38a6 NA other upstream 1068002 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 1095820 36976406 ~ 36991484 (+)
G221878 NA other upstream 1678263 36403148 ~ 36409041 (+)
G221737 NA other upstream 2030614 36052516 ~ 36056690 (+)
G221728 fbxo9 other upstream 2114950 35969989 ~ 35972354 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other downstream 648339 38735939 ~ 38744184 (+)
oip5 NA other downstream 807273 38894873 ~ 38898833 (+)
LOC103047486 LOC108443507 other downstream 1110107 39197707 ~ 39271138 (+)
G222694 ppp2r5e,LOC102786035 other downstream 1590902 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 2243473 40331073 ~ 40339652 (+)

Expression


Co-expression Network