CI01000009_00343750_00344964 (TRIM13)


Basic Information

Item Value
gene id CI01000009_00343750_00344964
gene name TRIM13
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 343750 ~ 345290 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00343750_00344964.mRNA
ATGGAGCTCTTGGAGGAGGACCTCACATGCCCAATATGCTGTTGTCTCTTCGAGGACCCGCGCGTTCTGCCGTGCTCTCACAGCTTCTGCAAGAAGTGTCTCGAGGGCATCCTGGACGGTAACCGGAGCCCTGCATGGAGACCACCGTTCAAATGTCCGACCTGTCGAAAGGAAACCGTGCACAACGGCATCGCGAGCTTGCAAGTCAATTACTCATTACGTGGCATCGTGGAGAAGTACAACAGGATTCGAGTGATGCCGAGGATGTCTCTCTGTCGAGTTCACAGCGGACAACCGCTCAATATCTTCTGCGCCACGGATCTGAAGCTCATCTGTGGGTTTTGCGCCACGACAGGTGATCATAAAGGACACAAGTTTTGCGCGCTGGAGGAGGCGTACGAACGCGAGAAGCTCGCGTTTGAGGACTTGTTTCGCGTCGTGGAGGGCTGGAGGGGCACGGAGGTGCATTCGTGCCTGGAATCGTTAGAGGGAGCTAAGAAGAAAGCGCTGGAGAGGGTATCGCGGGACGCCGATCAAGTCTCAGAGTACTTTGACAAACTTCTGCGCACGCTGGGGCACAAACGGAGCGAGATTCTCTCGGACTTGGAGACTCTGAAGCTTGCGGTAATGCAGACCTTTGACCCCGAGATCAACCAGCTGCGCTCGGCTCTAGAGGAGCAGCAGCGCGCTCTTAGCATCGCCGAATCTTTTCGTTCGCTCTCCGACCCGCTCACTTTCCTCCAGCAGATGCAGGACTTCAGAGAAAAGCTGCGTGTCATTCGGGGGACGCCACTGCCATCGCGGACTGACGTGGACGTGGGTTTGCTTGGCCTTCAGAGCTTCGATGTGAATGAATGGGACCGGGTGCGTCTTGGAGAGGTGGACAAGCTGTGCGCCCCCTACGAGAGCAGCGCGTACCTGTCTTCGCTGCCCCCTGCTGCCGCTCCGCGCTTCTCCCGGGTGATGTGGAGAGTTGTTCTGGTGGTATGTGCGTGTCTCCCCGCGCTGAACTTTCTTCCATCGGACTGTCTCGCTTTGAGCTTCCAGGATAAGGTGGTCGCGCTCAGTGGCTTTTCACTGCCCGGTCCTGGAGAGATTGTGCGCTGGCTCGGGTTCTGCTGGAAAGAAGCGGCTGAGATTTGCACACTACTAACAGAGCTGTGTCGGAACTGTATCTTGGACCTGATAAACACAACATCAGATTTCATCAGCTGATATTATAACTCCGTTCCTTAGGTACTTTTTTATGTACTACAATGTGCCAACCTAGAATATCCCGTAGATTTGTAGCATTGGAAAACGTTAGTTCTTGTCTCCGTTTTTGAATTTGTAACAAAATTACAGTTAGCATTTGTGTGGTATTAAATTGCTCTGATTTTGTCTGTTGGTTTTAAATGGAAAAACAAATGTGGATGGATGGGATACCAATGGGATAACGTTCCCAAACCTTAAATTAAAAACAAATTGCCCTATTCACTTTATAGAGCTGAATAGTTCATCTCCACAAGTTCATTTCGAATACGGGCTGACAGCTTGGTTGA

Function

symbol description
trim13 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in positive regulation of transcription, DNA-templated. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in chromatin and nucleoplasm. Is expressed in brain; male organism; muscle; ovary; and testis. Orthologous to human TRIM13 (tripartite motif containing 13).

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K12003 TRIM13; tripartite motif-containing protein 13

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00343750_00344964.mRNA True 1541 mRNA 0.52 1 343750 345290

Neighbor

gene id symbol gene type direction distance location
CI01000009_00326208_00333904 NA coding upstream 9449 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 20695 318256 ~ 323055 (+)
CI01000009_00300778_00315275 NA coding upstream 28345 300778 ~ 315405 (+)
CI01000009_00260081_00285692 RNF17 coding upstream 58039 259906 ~ 285711 (+)
CI01000009_00242093_00247335 FDX1 coding upstream 96407 241961 ~ 247343 (+)
CI01000009_00363403_00368182 RNASEH2B coding downstream 18113 363403 ~ 368216 (+)
CI01000009_00378726_00379550 NA coding downstream 33436 378726 ~ 379804 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 195479 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 202079 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 257938 603228 ~ 605392 (+)
G50662 NA non-coding upstream 7789 335039 ~ 335961 (+)
G50508 NA non-coding upstream 120902 176066 ~ 222848 (+)
G50480 NA non-coding upstream 225750 117563 ~ 118000 (+)
G50473 NA non-coding upstream 244694 97886 ~ 99056 (+)
CI01000009_00094836_00095813 NA non-coding upstream 246520 94371 ~ 97230 (+)
G50664 NA non-coding downstream 13188 358478 ~ 358706 (+)
G50666 NA non-coding downstream 35258 380548 ~ 380857 (+)
G50627 NA non-coding downstream 35924 381214 ~ 385408 (+)
G50639 NA non-coding downstream 42908 388198 ~ 388652 (+)
G50633 NA non-coding downstream 43460 388750 ~ 389122 (+)
G50920 NA other downstream 424551 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1077557 1429873 ~ 1435328 (+)
G51122 NA other downstream 1334856 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1548945 1897343 ~ 1919516 (+)
G51274 NA other downstream 1909809 2255099 ~ 2350486 (+)

Expression


Co-expression Network