XLOC_000073


Basic Information

Item Value
gene id XLOC_000073
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 6398210 ~ 6403223 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003023
CTACCATTTATTACACATAATGACATTCTTAAATAAAAATGCTTCACTTAACAGTTCTTGCATAGATATATTACAATAccaatttaaaaaagaattatgaAACAAACCGGTAACAAAAATAAACTCTTTTCCTTTTTCCTTAATAAAGAACATTGTCATACTAACAtcatataatacaaataatatatgcAAACACTTTTTACAGCAAATAAAacgaaaaataaacaaatcaaaaaacaGCATAAATATAGGAGCAAAGTGGAAAGCATGAAATGCCCGCGAAAAGCAGAGGAATCGGATTTATCTTACAGCAGGAAGTGTGGAAAAAAAGCCTTTAACCGGAAAACTACGCTACGAGTGCAACAGACATTAGAAATCACTCTGTTTATCAGCTTCGTACAATCCATTTTAAAGCTTTTAGCACAGCGTTTTGAGCAATGGAAGagtacaaaaaacaaaacgaTGCTTCGAATGGGAGCGAACGGACGCCAGCTGCTAACGTAAATGTACTAATGCATCAATCCAAAAACAACGCACGGACCTAAAACAGACTAATCAGAGTTTCACAAGATATGAAATGCATTCAAACTCCTAATATAGTGTTTCCCTGCATGTTTAGTAGTGTCTCTGCTCGTGTCGGATTTGTTAATTGTACaccaaatgtaaaaatgtacCTGCAAGTGTGCATCGTAATTACAAATAATTGCATTATCCCACAGCAGAAAGGTCAGTAAGTTGTCGATTTTAAAAGCGGCGAACGCACACGCTTTATACACACTTGAGGGATGCTAAAAGACAGTGCACATAAAAATAGTAGACGACGAGCTTCTCTGCGGGGCTTCTGGAGTCCATTAAGACAAACACATTAGCTGGTTTTGACCAAGGTAACGTCCCTAATTGGTCCTGCTGGAGGATGTTAAAGAAGGATTTTTAGGAAAAAGGTGCACTTAAATTGAACAAATGGTCAAGTCCATGAGGGAAACTGTTAGAGAGCGTCGTATGTCATGATTCGTGGATTGCAATAACTTGACGAGCTCTAAGAGAATTTGAGCACAAGCACAAAAGTTTTGTATTCAGGTGCACTGCAGATCCTCACAAAACATGATGGTCAAAAAATGGCCAGGACATATCACACCCTAAAACTGGATATATTAGTCAATTAAAACTACAATTGTGACATTTATATTGCAATTAGTAACAGTTAAACAGGTTTTAGTTAGATATGGATGCTTGTTCCTGCTATatgttgataataatattaataaaaacagtccCAAGTTCATGTTTTAGACcgaaaaatatacattaaatttactacatttttaaaggtaagtggttcCAAACAACTGATTTAGGctgaattttaacaaaaaattgaacgttactacatttaaatttgtttaaattcagtccatatgaactttttgcaaccacttaccttaaaaagatGTAGTAAACGCAATTGTTTTCACTTCTAGTTTTTGAGATGAAATGTGATCCGAGCATATTCTTGCCATGTTTTGTGATATTCACTCATAACCTGTTTCTCGTATGTTTTATCCATCTAGGAGCATCACAGGAGCCCCTAAAATAAACACTTTCAATGAGCATCACCAGGCTTGATCACCTGTGttacctgcactgtaaaaaaatctgttatttataaaaacgtaaattaacggcagttaaattacagtaacttaACATGAAATTTAACGTAAAATACGTAATCATAAAATAACgtcagttaaattacagaaatttaatgtaaaataacagacggtaaattacagaaatttaacgtAAAATAtgtgaacataaaataatgactgttaaatgatagaaatttaccgtaaaataacagacagtaaattacagaaatttttcatgaaattttatgtaaaatatgtaaacataaaataacggccattaaattacagacatttaccgtaaaataacagatgataaattacagaattttttcatgaaatttaatgtaaaatatgtaaacataaaataacggccattaaattacagaaatttaccgtaaaataacagacggtaaattacaattttttttttcatgaaattcaatgtaaaatatgtaaacataaaataacggccatttaattacagaaatataccgtaaaataacagatggtaaattacagaaatttttcatacaattttaatgtaaaatatgtaaaatacgcaaacataaaataacggctgttaaattacagtaatttaccataaaattaaatatatcgtaaaattttaatttaagaaaatttctgcaatttaacatctgttattttaacGGTAaacgtctgtaatttaacagccgttattttacatttattttctggCATCTTAGctgatggaaaaaaaataaataacagattttttttacagtgtagtgttggTTGTTTATGGAAATATTGGATTGTTTTTCCCAAAAATGTGGGACAGCATGATGCATATTATTGTTTGCATATCCCACGATCATGTTCTGATATAAATTTTGAACTACAAATTTTTACGGTATGTTGTAAACCTCCAGGTTGCAGTCTTAAAGGGCTGGTTCACCACAAATGGGAATTTCTCTCATTATTTTTTCACCCCCAACTTGTTTGCCCCAACCTATTCGAGTTTCCTCCttttgttgatcacaaaagaagatatttcgaaaaatgATGTAGCCATTGAtttttatagtaggttattttcCCTATTATGAGTGTCAGTTAGTTTCCATTCAATGATGTGGATTTAATCTATGTGCAAATTTGAAATATCGCATAAAACATATGCGAATGAAGCACCGTTTCCATCCAAAATGGtaacttcctgataaactgatggcaaatagcaaagagaaaatcTGAATTTTCTGCATTATTTTAGCCAATGTGAACTTTTTTCTTATGACACAGTAAGGGCCGGTGTCACAGACAAGGCTTAGTCTAAACCAGGATTAGATTTTAGTTCaattaagatttttaaataactttaataaacGTACACTACAAAAAACATTACTGTTTTGTATCTTGAGACAAAACAATAGTACTGACACATTTTGAGGTATACCAGTACAACTTGCTTTGTTACAATATCTCATACATGCATTTAACTCTAGGACTAGATTAAGCCTTGGGGTTATACTGGGGGTATATGTGCCTTAGAAAacgataaagtaaaaaaaataaacatgcgttgaTTATTCGAGTCGTGAGACGGACTTTGGGAAGCTCTTGGAGGTAATACTAGTGTACCACTTTGATGATGGGCTTTAGCTGAGggatattaaaattacaaaaacaacattttagatattttacaatgtgctcTGTCAACTAGTTTGTCCATTAATGACTATTTTTGTCATTGCAAGatctattaaaacaaaatcacatgacttttttgatgcGCATGCTCtagaatttattcagtaaatgtgtttccattctACCCTTTGCACCTTTATGtgttatcgaataaaaagtttatcctactcagtttttatgcacatttttaaaaatgtatgcatatCCTGGCATTTATATTAAGCATTTTTATGACACATTTCAAAATTAGATGTATGGTAACAAGGCTAATTGCTattgttcttcaaaatatcttcatttgtgatcgacagaaaaaaaaaactcaaaggtttgaaaccacttgagggtgagtaaatgatgcattaaattaaatttttcggtgaaccatctctttaaatCTCTAAGAAAAGCAAGCTTCGTGCACTAGATTTTAGCTTGAAATGGTCTGTGCGACGGTCTCTTGAGGACAGGGGATGCGCGCGGCTCTGCTCTGGATTCCTGTGACCTTGTGTCTTTGTTATTTTTCATGGAGCTAATGTGGCCAGGGAGGGAAGTAAGCCGACACCCGGCTACACGGTCAAATTGACTGTGTCGGGCAGTTGCGATAAGATCTCCCGGTCAGCATAAGTGTGGAGTATGACCCCCAGTGTGGTCCTACTCCGTTACGCCCCATTGAGGGGGTGACCAGTGCCTGGAGAGCCGAATTCCATTCTCATTACCCATACTGCCATTCTGACAGACAAGGCCTCCCGTTGGTTCATGTCAGACAAGTGAGTGAAAAGGACAAGGAACTGACTGACAGTGTGAACAAGTCATAACAATCCTTGTCTAACACTTATTTCTGGATGAAAGGAGTAAAATCTGGAGATGTGGTTATAAAATGTCATAGAAAGAGATGATTTTTGCTGACTTGAATGTGTTAATATGTCAGATATGAACTGGAAATCTTGACAAAGTCTGATTTATGAGATATAAGCCAAACATTTTTGGAGTTATGAACTTGATTTTGGAGATTGTGAAACGATAAAACATGTGTATGTCATttaaattacatatatttttccatttttaagCATCTATTTTAGGGGTTTAGAtgtaaaatgcatatttatacaCTATGGATAGTTTGCATTGGTTAAGGATTAATAAATCAAATCTAGGTGTGCTGTGCtcattttatagatttttagaTCTGGGGCTCTGATCTGGGgctctaatagacatcttttaaaaacaaaaaaatgcttgctgagtTACACCACAATACACAAGACTGCTATAACAGGATCATATGAACAGTTATTCATCTTCATGTCATGTCCAAACCTCCTACACAATGCCATAAGACGTTAataccaaaattcaatgtc

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0006936 muscle contraction biological_process
GO:0030154 cell differentiation biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0007275 multicellular organism development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0031033 myosin filament organization biological_process
GO:0031034 myosin filament assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0071688 striated muscle myosin thick filament assembly biological_process
GO:0071691 cardiac muscle thin filament assembly biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0032501 multicellular organismal process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0030424 axon cellular_component
GO:0030426 growth cone cellular_component
GO:0030427 site of polarized growth cellular_component
GO:0043025 neuronal cell body cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0033267 obsolete axon part cellular_component
GO:0044295 axonal growth cone cellular_component
GO:0044297 cell body cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0150034 distal axon cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003023 True 4720 lncRNA 0.33 2 6398210 6403223

Neighbor

gene id symbol gene type direction distance location
XLOC_000071 hecw2b coding upstream 32144 6357059 ~ 6366066 (+)
XLOC_000070 LO018629.1 coding upstream 68918 6307305 ~ 6329292 (+)
XLOC_000069 fastkd2 coding upstream 126064 6225493 ~ 6272146 (+)
XLOC_000068 retreg2 coding upstream 187492 6189949 ~ 6210718 (+)
XLOC_000067 cnppd1 coding upstream 212678 6161930 ~ 6185532 (+)
XLOC_000074 si:ch211-93g23.2 coding downstream 237214 6640437 ~ 6646356 (+)
XLOC_000075 ube2f coding downstream 243306 6646529 ~ 6664123 (+)
XLOC_000076 NA coding downstream 261810 6665033 ~ 6668339 (+)
XLOC_000077 NA coding downstream 355960 6759183 ~ 6760930 (+)
XLOC_000078 CU302223.1 coding downstream 384467 6787690 ~ 6787804 (+)
XLOC_000065 NA non-coding upstream 599118 5795013 ~ 5799092 (+)
XLOC_000064 NA non-coding upstream 669526 5706970 ~ 5728684 (+)
XLOC_000059 NA non-coding upstream 1084615 5311479 ~ 5313595 (+)
XLOC_000057 NA non-coding upstream 1368055 4901460 ~ 5030155 (+)
XLOC_000056 FO744838.1 non-coding upstream 1717733 4598060 ~ 4680477 (+)
XLOC_000080 NA non-coding downstream 553690 6956913 ~ 6990027 (+)
XLOC_000081 CU929161.1 non-coding downstream 660614 7063837 ~ 7063943 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G406927 NA non-coding CI01000299 null 3334043 ~ 3335207 (-)
eurasian perch (Perca fluviatilis) G106872 NA non-coding NC_053121.1 CM020918.1 21490056 ~ 21490821 (-)
mexican tetra (Astyanax mexicanus) G106275 NA non-coding NC_035908.1 CM008311.1 25558581 ~ 25560028 (+)