CI01000009_00378726_00379550


Basic Information

Item Value
gene id CI01000009_00378726_00379550
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 378726 ~ 379804 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00378726_00379550.mRNA
ATGCTGTGTGAAGGTAAGCTGTGGAGTTTGGTGTATGAAGCTGAACCTGAGTGTGTAAATCCTCCTACATGTGGCACAGTCACAGCACCATCATCGTCTCCGCTGACTCATTCCCTCTCAGCACAAACCCCTGTCCACTCACCTCTAGAAACACACACAAAAATGACCCGGACCAAGACCCAGCAGAGTGATGCTCACCTTTCCTCTACTGCCCCTGTGGCAGGACAGCAACCCGCCCTAGGTGTTGATATCCCCAGGCAGGCAGACACCCCAGAAGCAGAGGCCTTTTTAGTGCCTTCGAGTTGCCACAGCATCTGTCAGCATTACAACGATTTACATATTGCTGGTGGCCAGGTGCTGCCGCTTAGCCCTAGTGCAGGGGACGTACAGGGCAATCACATTCAGGACCCCCAACCTGGGCCCTTTCTTCTGTCTGGAGATGTCCCCTCACCCTCCCTCCTGCCTCCTCTTGTCCACGAGTACAGGGGCTCGAGGCGCTGGAGGGAAGAAAGTGGGCGTGAACGTCCCTCTCTTCTGCAGTTCGGCCAGCCCCTCTCTAATTCACAGCTCAATGGCTACCTGGAACAGAAGCTTCTGGAGCTGTACAGACAGCACCTGACCGAGGGGCCCACAGCGACAGGGCCGGTCATGGCCTCTGAGCTACTGCAGACCAGCCTTGACCAAATGACCCTCCAGCTGAGCCGTGAACAGAACATGGAGACGGCACGAGCCAAAGACATGCTGCTCAGCTGCCTGCTGAGAGTCACCAGCAGTTATCAGTCCAGCGAAATCAGCACCCCTCTACTGCAGATCTCCACTGAGTGAGTTTGATATGAGAGAAAAGATGAAATACAAGAGGAGGAAAGAAACGTTGTGGCAGTAAGACCAAGGAGATGGACTTTCACGTGTAATGTGTAACAAGTTTGAAACACTAGCTTGAAACACGTTAATCAGTGATTCTGTAAATTTTAACGTAATAGTAATTCTGAAAAATGCAACTGTGCAAAATAAATAAAATGTATTAATTAAAATGCTGTTGATTATTCAATGGTGTCCACAGTCATTAAGAGTCTGGATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00378726_00379550.mRNA True 1079 mRNA 0.50 1 378726 379804

Neighbor

gene id symbol gene type direction distance location
CI01000009_00363403_00368182 RNASEH2B coding upstream 10510 363403 ~ 368216 (+)
CI01000009_00343750_00344964 TRIM13 coding upstream 33436 343750 ~ 345290 (+)
CI01000009_00326208_00333904 NA coding upstream 44425 326208 ~ 334301 (+)
CI01000009_00318494_00322434 NA coding upstream 55671 318256 ~ 323055 (+)
CI01000009_00300778_00315275 NA coding upstream 63321 300778 ~ 315405 (+)
CI01000009_00541592_00545933 CMSS1 coding downstream 160965 540769 ~ 545997 (+)
CI01000009_00547369_00551459 NA coding downstream 167565 547369 ~ 552216 (+)
CI01000009_00603498_00605392 NA coding downstream 223424 603228 ~ 605392 (+)
CI01000009_00605366_00605964 COL8A1, COL8A1A coding downstream 225562 605366 ~ 606070 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding downstream 228709 608513 ~ 609375 (+)
G50664 NA non-coding upstream 20020 358478 ~ 358706 (+)
G50662 NA non-coding upstream 42765 335039 ~ 335961 (+)
G50508 NA non-coding upstream 155878 176066 ~ 222848 (+)
G50480 NA non-coding upstream 260726 117563 ~ 118000 (+)
G50473 NA non-coding upstream 279670 97886 ~ 99056 (+)
G50666 NA non-coding downstream 744 380548 ~ 380857 (+)
G50627 NA non-coding downstream 1410 381214 ~ 385408 (+)
G50639 NA non-coding downstream 8394 388198 ~ 388652 (+)
G50633 NA non-coding downstream 8946 388750 ~ 389122 (+)
G50631 NA non-coding downstream 15571 395375 ~ 495961 (+)
CI01000009_00094836_00095813 NA other upstream 282939 94371 ~ 97230 (+)
G50920 NA other downstream 390037 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 1043043 1429873 ~ 1435328 (+)
G51122 NA other downstream 1300342 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1514431 1897343 ~ 1919516 (+)
G51274 NA other downstream 1875295 2255099 ~ 2350486 (+)

Expression


Co-expression Network