Gene
RNA
| Item | Value |
|---|---|
| gene id | G222601 |
| gene name | NA |
| gene type | non-coding |
| species | mexican tetra (Astyanax mexicanus) |
| category of species | ornamental fish |
| Item | Value |
|---|---|
| chromosome id | NC_035921.1 |
| NCBI id | CM008324.1 |
| chromosome length | 46505145 |
| location | 39274538 ~ 39274832 (+) |
| genome version | Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005198 | structural molecule activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU301997 | True | 295 | lncRNA | 0.35 | 1 | 39274538 | 39274832 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC103040939 | LOC108414593 | coding | upstream | 122108 | 39052496 ~ 39152430 (+) |
| dcdc2b | dcdc2b | coding | upstream | 301429 | 38941253 ~ 38973109 (+) |
| iqcc | NA | coding | upstream | 334273 | 38932675 ~ 38940265 (+) |
| ccdc28b | ccdc28b,LOC107585497,LOC107675524,LOC107705395 | coding | upstream | 343779 | 38917631 ~ 38930759 (+) |
| tmem39b | tmem39b,LOC107675583 | coding | upstream | 358567 | 38907566 ~ 38915971 (+) |
| LOC103047800 | NA | coding | downstream | 60449 | 39335281 ~ 39371359 (+) |
| LOC111196043 | NA | coding | downstream | 99150 | 39373982 ~ 39376638 (+) |
| gphb5 | NA | coding | downstream | 302940 | 39577772 ~ 39583218 (+) |
| cdh23 | cdh23,LOC107679169,LOC107734258,LOC107676383 | coding | downstream | 811253 | 40086085 ~ 40110675 (+) |
| eif3l | eif3l,LOC102789421 | coding | downstream | 923556 | 40198388 ~ 40207129 (+) |
| G222603 | NA | non-coding | upstream | 3181 | 39271262 ~ 39271357 (+) |
| G222595 | NA | non-coding | upstream | 99962 | 39174182 ~ 39174576 (+) |
| G222589 | NA | non-coding | upstream | 112850 | 39161487 ~ 39161688 (+) |
| G222465 | NA | non-coding | upstream | 215628 | 38978249 ~ 39058910 (+) |
| G222454 | NA | non-coding | upstream | 381207 | 38890734 ~ 38893331 (+) |
| G222631 | NA | non-coding | downstream | 82842 | 39357674 ~ 39359817 (+) |
| G222632 | NA | non-coding | downstream | 96815 | 39371647 ~ 39408437 (+) |
| G222695 | NA | non-coding | downstream | 446726 | 39721558 ~ 39724437 (+) |
| G222708 | NA | non-coding | downstream | 464245 | 39739077 ~ 39763389 (+) |
| G222715 | syt16,LOC107683639 | non-coding | downstream | 481608 | 39756440 ~ 39761263 (+) |
| LOC103047486 | LOC108443507 | other | upstream | 3400 | 39197707 ~ 39271138 (+) |
| oip5 | NA | other | upstream | 375705 | 38894873 ~ 38898833 (+) |
| LOC103040744 | LOC103040744,LOC108439706,LOC108263332 | other | upstream | 530354 | 38735939 ~ 38744184 (+) |
| slc38a6 | NA | other | upstream | 2255236 | 37001085 ~ 37019302 (+) |
| mnat1 | mnat1 | other | upstream | 2283054 | 36976406 ~ 36991484 (+) |
| G222694 | ppp2r5e,LOC102786035 | other | downstream | 403670 | 39678502 ~ 39714015 (+) |
| zfyve21 | zfyve21 | other | downstream | 1056241 | 40331073 ~ 40339652 (+) |
| LOC103047655 | NA | other | downstream | 1074975 | 40349807 ~ 40352656 (+) |
| LOC103045954 | ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 | other | downstream | 1790826 | 41065658 ~ 41073316 (+) |
| LOC103046574 | NA | other | downstream | 1910129 | 41184961 ~ 41193209 (+) |
