G222631


Basic Information

Item Value
gene id G222631
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39357674 ~ 39359817 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302032
tatcgccaagagtatcagaAAAATAGCCTGCAAtattgtgaaattattttagggctatattACACACCTCTAGTAAGAATAGTTTTTatcagatacaaaaaaaaaatctgaacagTTTCAAATAAATATACGAAAAGGCAAATAAGAAACAAATACTTCGGGCCGATCTCCCAGAAAGGATTAAGTGCTATCCTGAACATTTTGGAACCAGGTGTTACCATGACTACAGCAAAAATACAGCTGTTTTGTTCACTATCCCAACACACCAGTGATCTGACACATGTTTCATAtgaaatgttaatgatgatgaAATACAGCAAATCTTAAAGAGGTTTGACTTAAAACATCTATCCCATAATAACCATCTTGGCTGAATTTCCTCAGtcatctttatgaggtagatttcttgtctcttaaagtgtttgagagcatcagttgtaaagtagtgaagaggtagagttgatatacagtgaatatacctatttgagtaatgttctaatacatattatatcaactatgtaaagaaaaatatcacttttaaaaatctcagtccatctgaaaaaaaaaatgcttttaagttactacatgattcattatgtgattatttcaatatttattaaaatgtaggaaaacaaagaaagaaacattgaatgagaagatgtgcccaaatttttgactgtaaaaacactcatattttaCCTCTCTGATCTTGTAGTCCTGTACAGATTAATCCGTTCACTTAGCTCATCTGAGGCAGATCTTCTCATCTCTAATTATCTCTAATAAGTGATCTACAGTTGGAGCCAGTTCTTTCAGTGCCGCACCCCCAAACTCTGGAATTCATTACATCATTACCTCTGAACTTGCACAATCTCCCTCCTTCTCATCAACACTGTAGACACATCTGTTAATTCAGCGCTTCTCCACATGTTATATGTCTATGTCTTCATATTGTTTCTACATTATATGAATCAGCTttaatctacaggggttggacaatgaaactgaaacacctGGGCagctctggtggaaacaggagagttgaggtgcacattgaattctgacgtgATTTGATCCGCTGTGGTTTGATGtcttttggatacaatccgggctagcacccaaacatcactttcagacagcttcctcttacagcgtccacagttaatcctgttggatccttcttggtggtatgctgacataaccctggataccgtggctcttgatacatcacaaagaccccaggctgctccaatttagccattaaacctcccacactaaaatgacaggtgtttcagtttcactgtccaacccctataCATTTGTGAATAGCAGTGattttcagtacagaatcatACCTGCTTTATTGCAGCATTCCTGAGGGCCTGAACTTCAGCTTTGTCCTTTGCACACAGGGATCTCCCCAGATTCTCTGAATCTGTTAATATTGAATATTGTGTACTGTAGATGGTGGGATATCCAAGTCTTTGCAGTTTTACGTTGaggaacattttctgaaattgtTCCAATGCTCTAAAAATcaatcataaaaaaatgataaagggAAACACGGCTCAAAACATTGAGTTTTACACTGACCAGGTCAGTCATCAGATCTTAACAGAATTCAGCTTAACAGAATTAACAGAAAAGCTTATAGCTTTAACAGAAAGCTGCACTTATAGCCTAGAAGGCACAACAGAGCGATACAAAATAGAGCAGTTTGTTAATGTCAGTGGATCACCAGCCTGATACGGTTATTACAAGCAAaggtaaaacaaataaaaaacaaataatgaatcaACATTTTGGGAGAATTGGCATTTCTTACTCCAGCAATCCCCTTACAGTCAAGAAGTTTAATGTATGCTTTAAGTCAGCTTTAGAGGAcacacatttctggacaagctaagaAATACAGCAATAATACAGGAATATTTACATGAATATGACGTCAGTCATTGTGAGTATTGTCCTGTCTGTTTCACCAGAGTTTTGCAGCACAGTTATAAGCTTTTATTGCAGATTAGTAGAGCGACCACAGTAATTTGGTGGGGCTGTTGTAAAGTGGAATAATATTGTtacattaaattgtattttcttATACTTATAGAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302032 True 2112 lncRNA 0.36 2 39357674 39359817

Neighbor

gene id symbol gene type direction distance location
LOC103040939 LOC108414593 coding upstream 205244 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 384565 38941253 ~ 38973109 (+)
iqcc NA coding upstream 417409 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 426915 38917631 ~ 38930759 (+)
tmem39b tmem39b,LOC107675583 coding upstream 441703 38907566 ~ 38915971 (+)
LOC111196043 NA coding downstream 14165 39373982 ~ 39376638 (+)
gphb5 NA coding downstream 217955 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 726268 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 838571 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 848589 40208406 ~ 40217036 (+)
G222601 NA non-coding upstream 82842 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 86317 39271262 ~ 39271357 (+)
G222595 NA non-coding upstream 183098 39174182 ~ 39174576 (+)
G222589 NA non-coding upstream 195986 39161487 ~ 39161688 (+)
G222465 NA non-coding upstream 298764 38978249 ~ 39058910 (+)
G222632 NA non-coding downstream 11830 39371647 ~ 39408437 (+)
G222695 NA non-coding downstream 361741 39721558 ~ 39724437 (+)
G222708 NA non-coding downstream 379260 39739077 ~ 39763389 (+)
G222715 syt16,LOC107683639 non-coding downstream 396623 39756440 ~ 39761263 (+)
G222734 NA non-coding downstream 443428 39803245 ~ 39805802 (+)
LOC103047486 LOC108443507 other upstream 86536 39197707 ~ 39271138 (+)
oip5 NA other upstream 458841 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 613490 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2338372 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2366190 36976406 ~ 36991484 (+)
G222694 ppp2r5e,LOC102786035 other downstream 318685 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 971256 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 989990 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1705841 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1825144 41184961 ~ 41193209 (+)

Expression


Co-expression Network