G222632


Basic Information

Item Value
gene id G222632
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39371647 ~ 39408437 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302033
gcttacagtatcaacATATGCTGGATATATTACATCGTACCCTCAATGTCATTACATGTCATTACACTTACCATATTCCCACATTCTTGCCAACACAGCCATAATGGTAATGCTGTAAACCTGATGAAAAATTAAGCTGAACCCAGTAACACTGTTTTGGCCCTGAGGCAAATATTTCCCACCTGAGTATGTCATATGCCTTTGATTATCTGTGTGATTCATCTCGATTTAATGCACTGATTAAAATAATCTGTAATGACTGTGCGACTTTGAGTGTGTTTTTACATGTTGTAAAATGGGCAGGCGTGTACGTGTGTTCacgtttattttgttaatttccagtccagtgtgtgtgtgtgtttgtgtgtatt

Function

GO: NA

KEGG:

id description
ko04371 Apelin signaling pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU302033 True 371 lncRNA 0.38 2 39371647 39408437

Neighbor

gene id symbol gene type direction distance location
LOC103047800 NA coding upstream 288 39335281 ~ 39371359 (+)
LOC103040939 LOC108414593 coding upstream 219217 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 398538 38941253 ~ 38973109 (+)
iqcc NA coding upstream 431382 38932675 ~ 38940265 (+)
ccdc28b ccdc28b,LOC107585497,LOC107675524,LOC107705395 coding upstream 440888 38917631 ~ 38930759 (+)
gphb5 NA coding downstream 169335 39577772 ~ 39583218 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 677648 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 789951 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 799969 40208406 ~ 40217036 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 1577737 40986174 ~ 41008038 (+)
G222631 NA non-coding upstream 11830 39357674 ~ 39359817 (+)
G222601 NA non-coding upstream 96815 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 100290 39271262 ~ 39271357 (+)
G222595 NA non-coding upstream 197071 39174182 ~ 39174576 (+)
G222589 NA non-coding upstream 209959 39161487 ~ 39161688 (+)
G222695 NA non-coding downstream 313121 39721558 ~ 39724437 (+)
G222708 NA non-coding downstream 330640 39739077 ~ 39763389 (+)
G222715 syt16,LOC107683639 non-coding downstream 348003 39756440 ~ 39761263 (+)
G222734 NA non-coding downstream 394808 39803245 ~ 39805802 (+)
G222731 NA non-coding downstream 397458 39805895 ~ 39808427 (+)
LOC103047486 LOC108443507 other upstream 100509 39197707 ~ 39271138 (+)
oip5 NA other upstream 472814 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 627463 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2352345 37001085 ~ 37019302 (+)
mnat1 mnat1 other upstream 2380163 36976406 ~ 36991484 (+)
G222694 ppp2r5e,LOC102786035 other downstream 270065 39678502 ~ 39714015 (+)
zfyve21 zfyve21 other downstream 922636 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 941370 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1657221 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1776524 41184961 ~ 41193209 (+)

Expression


Co-expression Network