G222715 (syt16,LOC107683639)


Basic Information

Item Value
gene id G222715
gene name syt16,LOC107683639
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 39756440 ~ 39761263 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302133
agtttgtctgttcctTGTTATGtgataaactaaaaatccacaaaaataagatacttgtttttcattggaaagtGACGCTATGTAGGTTGCTCAGGTGACATCCaaatgccacaaaaaaaaaattaaatggggGTATTTACACAAGACAAAGTGGCTGCTGAGCATTTAGTCTAAAACATTTGCTCTTACACCCCTATACCCCTATTCATTCtctcagaagaaaaaaatgtatgcaataAAAAATGACCACAAAAAATTGATAgacaaaaatagatatttttttaatctacaaAACCACTTGAACAGGACATATTACCATGCAATCTGCATTACAGGCAGTGTTGAGTGTAGAGTCAACTGTAAAATGTTAAGATCCATGCAGTTGGACAATCCTGGACAATTCCATACATTCCATGCTGGCCTAACACAGCCTagattagccataacattaaaaccatctgCCTAAAATTGACTCTGCTCTAATTAAgtcctgtaagttgtgaggtaggACTTACtgctgactgttcacttgctgtcTAACAATGTACTGTAGCTGTTACCCATTAACAGATCCCATTGGAAGCAGAGGTTAATCAATGTAGTTCCCTTTATATcgcagtggttttaatgttatggctgttgTATGGCTggtatatattataaacacaattCGACTCATATACCATAAGTTCTAAAATATTGAACAGGCACTTCATATGCATATACAATCCAAGCATGctgtacaaaatatatatttttttcagacatgTGGACATTGTTTGATGATGTGAATTAATATACATATGCTACAATCTGTAGAAAGTTCCAGACATGCATAAGAATATGACAAAAATGGGTACAGTGTCTCAAGTATGAAAAATATGAACCCATTAGCCAGGAGAgatatggaaaaaaacagcaaagctTCGGGTATTTTGATGTGCAGAGGTTATAAAAGAGTAAAACAAACAGTCATTAGGAGTAACATAATAGGTGCAtctcaaataaaatgtatatattttatagattcATTACACACGGAGTGGTATttcaagtgtttatttattaatatgttaataatttTGGCTTACAGATAATGAAAACCCAGAAGTCAGTATCTTTtttgaaaatttgaatattacataagaccagttggtacatttggcagtgtgggcaggtgccaagtcctgctgaaaaatgaaatctgcatctctaagCTTGTCAATTTTCTCAGATACTGGCttaattattaacattaaaataaattaaatgaataaaacacttGACACAGATAtttcatatataataatatgagtaacctaattactaaaataaatcaactttttaattattttcgaGATGCACCTGAACAGtgttgtaaaaaagtatttgtcccATTACAGTTTCTTTTGTTTGTCACATTTAATTACACaatacagctattaaatgatcatttgttttaatgcagacttaaaacttaaatcatCAATGTGAATCAATGTGCCCCTAAAACTAGAAACTTCTTGTGCAATCTTTACCAGTAAAAACTGATATCAAACTTTAATAGAGTTACATTGATAACTCTTTTACACCTTTGTAGAGGATTTCTGGTCctctcttttttacaaaattgcTTTGATTTGGCAACATTGGTCAGTTTTCCATGACAAACTGCCTATTTAATATATTCCTGCTTCCTCTCAATGTGATTCAAGTTTGGAGattggctatgttcacattaccaggctgaagtgactcaaatccgattttttttttgcttaatgtggctcagatcttattttttcatggctgtgtgaacatgccaaaacatgtttttttttcaaatcagatttgagttactttcatatgtggtcctaaatcggatacatatccgatccatggacatgcgacgcgaatgtaaacagtcaaatcggaattcatgcgtctttttgcttttacgcattagcattagcgctacgtgcttctctctcttacacacacatctctcggtgcagctgtgcagctatagctgcaaaaacagcaaaagcaaaccgcctggccttttttcacatcctcgacctgagcatgaacttcagaccagctgtttactctccactccagcaaaacatgctccacatatgagctgctaacacatccatttccctttataaagctacgaatcgtctctcaaatatgagtttttttttttgttggtgaagaagatgatgtttatacacgtatcattGTGCGCATGTGAGGAGTTTCAAGGAcatgtttgttcacattactcacacagatacagcttacttacatttgtgaaaatgACCTATCAAGATAACCAAATCtaatttgagcaatgtggcttgtaatgtgaacacagccaTTCAAAAacttcagaggtggacttgtgtgatttggatcattgtcctgctgcataaTTCAACTGCGCTTGAGCTTTAGTTCACAAACAAATTTAGAATGGAAAGGGAATTAAACCACAGCACCAATGTTTACTGTACTACAGTCGAattcaaaaactaaagaaagtGTAAAACTTTTTCACAACTCTGTAGGTAGTCTTCTTAtttcacaaaatatataaaatgaattaaagctACAACTGAAGTGATTGTAAACACTATAGGTGCTATATGCACGAGTGTAACTCAAAACCAGTTTCAGGTCTGCAGATGAAAGTGCACGAGTGACTGTATGACTCTAATAGTGGTCAAATCAAACCAGTTTTCCCCCACCTCAGTGATGGTCACCTTAAAAAGCTCCATAACCGCTAGACATGGGCTCTGTAGAGCCTCTGAGCCTGAGGTGAAAGAGTCAGCTAATCACAGGTCGACAATTAGGCCTCCATTCATTCATGCAATCACAAGGCGGCGGCCACCGCTGAACCAGCAATAATGAGTGATTGGTAGTGGAGAGCACTCCATTTTAAATGGGTGAACCAGCTCTGCACTGTGACGTCACATCCTGGAGACGAGATAAGAGGATGCAATAAAAGCTGCTGTAAGTGAAGGACAGCTGGAGCTGTAAAATCAATCACAGTCCCTTTCTTCTATATGCATCCATTGCTTTACAACATTGGTGCCCGGCTCTCCTATTGAATATACCTTCCTGCCAAGTCCTGATACAACCTAGAGCTCAGAAACTTGGAATACAGTTTGTTCAGATTGTGAAAACACTGACTGGGTATGGTTAGGTATGGCTAATTAAGGCTGGAACTAACTTGGCATTCGGATGCTTGTGGTAGGTGGTAGAAATATtggtagaataaaaaaaaaagagaagattttattatacatatatatcatattCAACGTCATGTCTGCTCATCTGCTTTTGCATGCTGATTGATCATGCATGTTTTATCCAAAGCAAAGTCTTTGTTATTTGCAGAGCCATTGAGAAGATGATGTTCCATAGAACTGAGCGACATGAAAAAAGTGGCAATTTAACATGAAGCCACAATTGTCGCTTATGCCTCAAaagtttagatcaggggtgtccaaactttttttgttgggggccagaaggagaaatatatttgaagttacGGGCCACActcaaacaaataatgaaatataccaatttaaataatacttttagactctgtttttctgcgctagaaatgcgcaccctttTTTTTGACTCTTTTGActctttttttctgcgctagaaagcgcactctctccgcttatagactctttgccccgtttttctgcgctagaaatgcgcaccctctccacttttagactctttggccccatttcctgcgctagaaatgcgcactctctccacttttagactcttttgcccctttttttctgtgctagaaatgcgcaccctctcagcttttagactctttggcccgattttctgcgctaaaaatgcgcaccctctccgcttttacactatttggcccgattttctgcgctaaaaatgcgcaccctctccgcttttagactctttgccccgtttttctgcgctagaaatgcgcaccctctccgcttttagactctttggcccgtttctgacacctagcgttcaaactttgaatctcacattataaaaagctgcttaacagcgggccaactttcattctatttctaaaatacctagctgtagtttggacacccctggtttagatgTTTTTAACCATCTGAATGCTTTAACAGCAAAGAAAAGCAACAGACAGAATGGCCGAATGAAAAACTCCTTTATACAAGAGCTCTTTAAAGGACTCTTTATCCCACTTCCAGTGTAACAAAGCCAGCTTCACAAGCTTACAAGCTAATATGATCTCTATGGATTTACTCTGGTCATCTTGTATCCAGTTCTCCAGTGCTCTAGGTGGCGCTAGGTGGCACTATTTACTATAGACATTTCCATTGTTACTAAAAGACTTAAGGTTTCCTTTAAAGTTTCACCAAAGCACAAAAATGGTTTAGCTTGATCAGGTCACTAGGCCTCCAGGAGTGTGTGCCAGCGACAGACCTGCTGGTTGCCGCTCTCCTTCATGTCCTGCCAGTGCAGCGCCTCCTCCTCGCCACTGCTGTTCTGGCCCAGCGCCAGCCAGCCAATCATCTCCTTGCGCTTCATGTTGCGGCGGTTGTAGACGGCCACCATGAGGGTGACGTCAGACAGCTGGAAGAGCGCCACCTGGAAGACGAAGGTCTCCTTGAAGACGGGGTTGGGCTGCCCACGCCGCACCGAAGTCTTGCAGCGAGAGATCTCCTGACCCATGGAGTTCAGCAGGGTCA

Function

symbol description
syt16 Predicted to act upstream of or within exocytosis. Orthologous to human SYT16 (synaptotagmin 16).

NR:

description
PREDICTED: synaptotagmin-16 isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302133 True 4772 lncRNA 0.39 2 39756440 39761263

Neighbor

gene id symbol gene type direction distance location
gphb5 NA coding upstream 173222 39577772 ~ 39583218 (+)
LOC111196043 NA coding upstream 379802 39373982 ~ 39376638 (+)
LOC103047800 NA coding upstream 385081 39335281 ~ 39371359 (+)
LOC103040939 LOC108414593 coding upstream 604010 39052496 ~ 39152430 (+)
dcdc2b dcdc2b coding upstream 783331 38941253 ~ 38973109 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding downstream 324822 40086085 ~ 40110675 (+)
eif3l eif3l,LOC102789421 coding downstream 437125 40198388 ~ 40207129 (+)
LOC103047342 NA coding downstream 447143 40208406 ~ 40217036 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 1224911 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 1328239 41089502 ~ 41098828 (+)
G222695 NA non-coding upstream 32003 39721558 ~ 39724437 (+)
G222632 NA non-coding upstream 348003 39371647 ~ 39408437 (+)
G222631 NA non-coding upstream 396623 39357674 ~ 39359817 (+)
G222601 NA non-coding upstream 481608 39274538 ~ 39274832 (+)
G222603 NA non-coding upstream 485083 39271262 ~ 39271357 (+)
G222734 NA non-coding downstream 41982 39803245 ~ 39805802 (+)
G222731 NA non-coding downstream 44632 39805895 ~ 39808427 (+)
G222732 NA non-coding downstream 47306 39808569 ~ 39810826 (+)
G222817 NA non-coding downstream 279159 40040422 ~ 40041726 (+)
G222819 NA non-coding downstream 289244 40050507 ~ 40113663 (+)
G222694 ppp2r5e,LOC102786035 other upstream 42425 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 485302 39197707 ~ 39271138 (+)
oip5 NA other upstream 857607 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 1012256 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 2737138 37001085 ~ 37019302 (+)
zfyve21 zfyve21 other downstream 569810 40331073 ~ 40339652 (+)
LOC103047655 NA other downstream 588544 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 1304395 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 1423698 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 2482548 42243811 ~ 42371581 (+)

Expression


Co-expression Network