zfyve21 (zfyve21)


Basic Information

Item Value
gene id zfyve21
gene name zfyve21
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 40331073 ~ 40339652 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302391
GCTTCACGGCGGTGGACAGAAGATAGTTTGATGGAAAAATGTCAGCGGTGCCTGACGGCAAGAAGCTGGTCCGCAGCCCGAGCGGACTCCGCATGGTGCCGGAGAACGGAGCGTTCAACAGCCCGTTCTCGCTAGACGAGCCGCAGTGGGTGCCGGATAAAGAGtgtgcCAGATGCATGCAGTGTGACACCAAGTTTGACTTCATCACCAGGAAAcACCACTGTCGGCGGTGTGGTCGGTGTTTCTGTGATAAGTGCTGCAGTAAGAAGGTGGCTCTTCCCAGGATGTGTTTTGTGGACCCGGTCAGACAGTGTGCGGAGTGCAGCCTCATCTCCCAGAAAGAGGTGGAGTTCTACGATAAACAGCTGAAAGTGCTCATGGCCGGGGGCACGTTCTTGGTCACAGTTGGCTCCTCAGAGAAATCAGAGACCATGGCGTGTCGTCTGGCAAACAACCACAGATACCTGTTCCTGGATGGAGAGAGTCATTTCGAGGTGGAGCTTTCTCGGATCTCCACCATGCAAGTGCTGACGGAGGGCTCCACCCCCGGGGAGAAAGATATTCATACTTACACCACTCTTCTGGACAGTCAATATATATCTGAAGGTCAgcgtgtttctctctctttctctctctatcttttgtgtctctttctttcact
>XM_022685147.1
TGTgaagacaaaatgtaaaatgtaacatGTAAGATAAACCGATTAACTGATTAACAATGAGTTTTAATAAGCGCCCAGAATGGAGATTAGAGTTGGATAAGCGAGACTTTTAAATTGACGTCTGGCAGAAACACAATACTGGCCGCGTCCTAATAATTAAATCCACCCTCCTTTCCTATGCTACGCCCTTAATTTTGCCTGATCTTGTAATCATGTGGATCCACCTCTTCTTATAATCTACAACCGCTGTGGTCTTTAAGGGTTCGCCTGTAGTTGGTACGCCATCCGCCATTAATACgaacgaagaagaagaagaagaagtctttaagggttttttttccagattagGCAAAATCGAGGCAGGTCGCTGAAAATAGGAGCCTTCGCGCTACAATTGGGACGCAGCCACAGAGTAAAGAAACACACAGAGCGCTTCACGGCGGTGGACAGAAGATAGTTTGATGGAAAAATGTCAGCGGTGCCTGACGGCAAGAAGCTGGTCCGCAGCCCGAGCGGACTCCGCATGGTGCCGGAGAACGGAGCGTTCAACAGCCCGTTCTCGCTAGACGAGCCGCAGTGGGTGCCGGATAAAGAGtgtgcCAGATGCATGCAGTGTGACACCAAGTTTGACTTCATCACCAGGAAAcACCACTGTCGGCGGTGTGGTCGGTGTTTCTGTGATAAGTGCTGCAGTAAGAAGGTGGCTCTTCCCAGGATGTGTTTTGTGGACCCGGTCAGACAGTGTGCGGAGTGCAGCCTCATCTCCCAGAAAGAGGTGGAGTTCTACGATAAACAGCTGAAAGTGCTCATGGCCGGGGGCACGTTCTTGGTCACAGTTGGCTCCTCAGAGAAATCAGAGACCATGGCGTGTCGTCTGGCAAACAACCACAGATACCTGTTCCTGGATGGAGAGAGTCATTTCGAGGTGGAGCTTTCTCGGATCTCCACCATGCAAGTGCTGACGGAGGGCTCCACCCCCGGGGAGAAAGATATTCATACTTACACCACTCTTCTGGACAGTCAATATATATCTGAAGGTCAgcgtgtttctctctctttctctctctatcttttgtgtctctttctttcactgttGCTTTTAAATGGATTTGCCTTctctcaaaataaaaatagttttattaatggttttattAGATGCATTAGGTGTAAAGCTGTGACCTTCCACTTCATATCTAATACAAAGACTTTAATTAATCAAGAATGTTACATGGAAAAATTACAGGGTGAAAATGGTTGAAGAGCTTCTATTTGCAAGAAAATTCATGGACACTACATGGCCAAACATATGTGGACATCCCTttgaattacattttataagGTATTTAACAGGAACCATGCAGATGTCGCAACTAATTTTGTGAAATCGCTATCCAGCTAGAGCTGCCCCAGTCAACTGTAAGTGCTTTAATGCAGGTAATAAGCATAAGGCATTTGCTAATCTTTAACCTCCTGGTGTCAAAGGGATATAAATCTGGCCAGCAGCTGAATAGGTGGGACAATTCGgccagataa

Function

symbol description
zfyve21 Predicted to enable metal ion binding activity. Orthologous to human ZFYVE21 (zinc finger FYVE-type containing 21).

NR:

description
zinc finger FYVE domain-containing protein 21 isoform X1

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K24779 ZFYVE21; zinc finger FYVE domain-containing protein 21

RNA

RNA id representative length rna type GC content exon number start site end site
TU302391 False 661 TUCP 0.53 6 40331504 40339211
XM_022685147.1 True 1533 mRNA 0.45 6 40331073 40339652

Neighbor

gene id symbol gene type direction distance location
LOC103047342 NA coding upstream 114037 40208406 ~ 40217036 (+)
eif3l eif3l,LOC102789421 coding upstream 123944 40198388 ~ 40207129 (+)
cdh23 cdh23,LOC107679169,LOC107734258,LOC107676383 coding upstream 220398 40086085 ~ 40110675 (+)
gphb5 NA coding upstream 747855 39577772 ~ 39583218 (+)
LOC111196043 NA coding upstream 954435 39373982 ~ 39376638 (+)
LOC103045354 fndc5,LOC108237574,LOC107575402,LOC108238726,LOC106589070,LOC102792536 coding downstream 646522 40986174 ~ 41008038 (+)
LOC111196049 NA coding downstream 749850 41089502 ~ 41098828 (+)
LOC111195996 NA coding downstream 856333 41195985 ~ 41198825 (+)
LOC103044280 NA coding downstream 937333 41276985 ~ 41279078 (+)
LOC103042542 NA coding downstream 948309 41287961 ~ 41294250 (+)
G222868 NA non-coding upstream 18236 40309880 ~ 40312837 (+)
G222869 NA non-coding upstream 21298 40308948 ~ 40309775 (+)
G222850 NA non-coding upstream 90069 40240758 ~ 40241004 (+)
G222819 NA non-coding upstream 217410 40050507 ~ 40113663 (+)
G222820 cunh10orf54 non-coding upstream 264081 40062324 ~ 40066992 (+)
G222884 NA non-coding downstream 1902 40341554 ~ 40342874 (+)
G222887 NA non-coding downstream 60125 40399777 ~ 40400065 (+)
G222888 NA non-coding downstream 81421 40421073 ~ 40421516 (+)
G222890 NA non-coding downstream 144726 40484378 ~ 40484665 (+)
G222891 NA non-coding downstream 152239 40491891 ~ 40512875 (+)
G222694 ppp2r5e,LOC102786035 other upstream 617058 39678502 ~ 39714015 (+)
LOC103047486 LOC108443507 other upstream 1059935 39197707 ~ 39271138 (+)
oip5 NA other upstream 1432240 38894873 ~ 38898833 (+)
LOC103040744 LOC103040744,LOC108439706,LOC108263332 other upstream 1586889 38735939 ~ 38744184 (+)
slc38a6 NA other upstream 3311771 37001085 ~ 37019302 (+)
LOC103047655 NA other downstream 10155 40349807 ~ 40352656 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other downstream 726006 41065658 ~ 41073316 (+)
LOC103046574 NA other downstream 845309 41184961 ~ 41193209 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other downstream 1904159 42243811 ~ 42371581 (+)
G223269 NA other downstream 2823629 43163281 ~ 43166134 (+)

Expression


Co-expression Network