CI01000009_00605366_00605964 (COL8A1, COL8A1A)


Basic Information

Item Value
gene id CI01000009_00605366_00605964
gene name COL8A1, COL8A1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000009
NCBI id null
chromosome length 16003125
location 605366 ~ 606070 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000009_00605366_00605964.mRNA
GTCCACCTGGCCCAAATGGAAATCCAGGTCAGCCAGGAATCCCAGGTCCACCGGGACCTCCTGGACCCCCAGGCCCCCCTCCTTCCCCTGACCTGATGGGTGTTCTTCCTGAGATGGGCCCTGCCCTTGATGGTATGAAAACTGGTGGGTACAAGAAAGGGAAGTATGCTGGTGGGGGTGATATGATGGGTGCCAGTGGTCTGGAGATGCCTGCTTTCACTGCCCAGCTGACCACACCATTTCCTCCAGTTGGCACGCCAATAGTTCTTGACAAACTACTATATAATGGACGTCAGAATTACAACCCTCAGACCGGTGTGTTCACCTGTGACCTACCAGGCATCTACTACTTTGCCTATCATCTGCACTGCAAGGGTGCCAATGTATGGGTTGGGCTCTACAGGAATGGAGAGCCACTTATGTATACATATGATGAATACAAGAAGGGATTCCTGGATCAAGCATCTGGGAGTGCTGTGATTCCATTACAACCAGGAGACACAGTTTATTTACAGTTACCATCTGACCAGGCAGCTGGATTTTATGCAGGACAGTATGTCCATTCCTCCTTCTCTGGCTTTTTACTGTACCCAATGTAGATCGCAAGAATAAGTAAGAGAATTTGAAGGAGAGAGGGAAGAAAGAACTGACATTAAAATGTTTGACTTAAAAATGTCAATATTTTTAGGTACATTCTCACAGGGA

Function

symbol description
col8a1a Predicted to be an extracellular matrix structural constituent. Acts upstream of or within head development and notochord formation. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Predicted to be active in extracellular matrix and extracellular space. Is expressed in several structures, including epidermis; hypochord; notochord; prechordal plate; and splanchnocranium. Orthologous to human COL8A1 (collagen type VIII alpha 1 chain).
col8a1 Predicted to be an extracellular matrix structural constituent. Involved in endodermal cell differentiation. Colocalizes with collagen-containing extracellular matrix.

GO:

id name namespace
GO:0048570 notochord morphogenesis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000009_00605366_00605964.mRNA True 705 mRNA 0.48 1 605366 606070

Neighbor

gene id symbol gene type direction distance location
CI01000009_00547369_00551459 NA coding upstream 53150 547369 ~ 552216 (+)
CI01000009_00541592_00545933 CMSS1 coding upstream 59369 540769 ~ 545997 (+)
CI01000009_00378726_00379550 NA coding upstream 225562 378726 ~ 379804 (+)
CI01000009_00363403_00368182 RNASEH2B coding upstream 237150 363403 ~ 368216 (+)
CI01000009_00343750_00344964 TRIM13 coding upstream 260076 343750 ~ 345290 (+)
CI01000009_00608513_00609159 JAGN1, JAGN1A, JGN1A coding downstream 2443 608513 ~ 609375 (+)
CI01000009_00611583_00617762 TFG coding downstream 5235 611305 ~ 617762 (+)
CI01000009_00620687_00621072 NA coding downstream 14617 620687 ~ 621537 (+)
CI01000009_00704243_00710805 NA coding downstream 97995 704065 ~ 710805 (+)
CI01000009_00719164_00724772 SRPX coding downstream 113094 719164 ~ 725051 (+)
G50855 NA non-coding upstream 14753 590132 ~ 590613 (+)
G50735 NA non-coding upstream 66855 538171 ~ 538511 (+)
G50719 NA non-coding upstream 100747 504418 ~ 504619 (+)
G50631 NA non-coding upstream 109405 395375 ~ 495961 (+)
G50633 NA non-coding upstream 216244 388750 ~ 389122 (+)
G50881 NA non-coding downstream 17664 623734 ~ 623957 (+)
G50883 NA non-coding downstream 30404 636474 ~ 636705 (+)
G50880 NA non-coding downstream 38715 644785 ~ 645049 (+)
G50878 NA non-coding downstream 87956 694026 ~ 695215 (+)
G50902 NA non-coding downstream 91535 697605 ~ 697840 (+)
CI01000009_00094836_00095813 NA other upstream 509579 94371 ~ 97230 (+)
G50920 NA other downstream 163771 769841 ~ 770233 (+)
CI01000009_01431700_01434463 NA other downstream 816777 1429873 ~ 1435328 (+)
G51122 NA other downstream 1074076 1680146 ~ 1681966 (+)
CI01000009_01897343_01919208 PIKFYVE other downstream 1288165 1897343 ~ 1919516 (+)
G51274 NA other downstream 1649029 2255099 ~ 2350486 (+)

Expression


Co-expression Network