G223201


Basic Information

Item Value
gene id G223201
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035921.1
NCBI id CM008324.1
chromosome length 46505145
location 42532110 ~ 42532422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU302851
ttagcacccgaacatccctttcagacagcttcctcttacagtgtccacagttaatcctgttggatgtggttggttcttcttggtggtatgctgacattaccctggataccgtggctcttgatacatcacaaagacttgctgtcttggtcacagatgctccagcaagacgtgcaccaacaatttgtcctcttttgaactctggtatgtcacccataatgttctgtgcattgcaatattttgagcagaactgtgctcttaccctgttaattgaaccttcacactctgctcttactggtgcaatgtgcaattaatg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU302851 True 313 lncRNA 0.44 1 42532110 42532422

Neighbor

gene id symbol gene type direction distance location
LOC103043683 NA coding upstream 310056 42215743 ~ 42222054 (+)
LOC103042542 NA coding upstream 1237860 41287961 ~ 41294250 (+)
LOC103044280 NA coding upstream 1253032 41276985 ~ 41279078 (+)
LOC111195996 NA coding upstream 1333285 41195985 ~ 41198825 (+)
LOC111196049 NA coding upstream 1433282 41089502 ~ 41098828 (+)
LOC103047539 NA coding downstream 179038 42711460 ~ 42721934 (+)
fam204a fam204a coding downstream 241823 42774245 ~ 42802285 (+)
rab11fip2 rab11fip2 coding downstream 376083 42908505 ~ 42935835 (+)
LOC103028407 NA coding downstream 656938 43189360 ~ 43193440 (+)
LOC103043584 LOC108426108 coding downstream 768464 43300886 ~ 43310949 (+)
G223198 NA non-coding upstream 42235 42489583 ~ 42489875 (+)
trnag-gcc_46 NA non-coding upstream 68741 42463299 ~ 42463369 (+)
G223192 NA non-coding upstream 78873 42452849 ~ 42453237 (+)
trnag-gcc_45 NA non-coding upstream 113441 42418599 ~ 42418669 (+)
trnag-gcc_44 NA non-coding upstream 113606 42418434 ~ 42418504 (+)
G223207 NA non-coding downstream 97555 42629977 ~ 42630263 (+)
trnag-gcc_47 NA non-coding downstream 169235 42701657 ~ 42701727 (+)
trnag-gcc_48 NA non-coding downstream 169567 42701989 ~ 42702059 (+)
trnag-gcc_49 NA non-coding downstream 169736 42702158 ~ 42702228 (+)
G223218 NA non-coding downstream 198175 42730597 ~ 42730923 (+)
gfra1 gfra1a,LOC108442611,LOC107568111,LOC107666504 other upstream 160529 42243811 ~ 42371581 (+)
LOC103046574 NA other upstream 1338901 41184961 ~ 41193209 (+)
LOC103045954 ypel5,slc30a10,LOC107568027,LOC108441457,LOC102788175,LOC102210471 other upstream 1458794 41065658 ~ 41073316 (+)
LOC103047655 NA other upstream 2179454 40349807 ~ 40352656 (+)
zfyve21 zfyve21 other upstream 2192458 40331073 ~ 40339652 (+)
G223269 NA other downstream 630859 43163281 ~ 43166134 (+)
G223335 micu1 other downstream 1079201 43611623 ~ 43615389 (+)
mcu mcu other downstream 1147729 43680151 ~ 43769000 (+)
mcph1 mcph1 other downstream 2363755 44896177 ~ 44947346 (+)
tmem14a tmem14a,LOC108425445 other downstream 2433274 44965696 ~ 44968097 (+)

Expression


Co-expression Network